Difference between revisions of "Main Page"

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Revision as of 22:39, 6 November 2016

hosted by SBGridlogo2.jpg
Welcome to the PyMOL Wiki!
The community-run support site for the PyMOL molecular viewer.
To request a new account, email SBGrid at: accounts (@) sbgrid dot org
Quick Links
Tutorials Table of Contents Commands
Script Library Plugins FAQ
Gallery | Covers PyMOL Cheat Sheet (PDF) Getting Help
News & Updates
Official Release PyMOL v1.8.4 has been released on October 4, 2016.
New Script dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
New Plugin LiSiCA is a new plugin for 2D and 3D ligand based virtual screening using a fast maximum clique algorithm.
Official Release PyMOL v1.8.0 has been released on Nov 18, 2015.
PyMOL Open-Source Fellowship Schrödinger is now accepting applications for the PyMOL Open-Source Fellowship program! Details on http://pymol.org/fellowship
Official Release PyMOL, AxPyMOL, and JyMOL v1.7.6 have all been released on May 4, 2015.
New Plugin PyANM is a new plugin for easier Anisotropic Network Model (ANM) building and visualising in PyMOL.
New Plugin Bondpack is a collection of PyMOL plugins for easy visualization of atomic bonds.
New Plugin MOLE 2.0 is a new plugin for rapid analysis of biomacromolecular channels in PyMOL.
3D using Geforce PyMOL can now be visualized in 3D using Nvidia GeForce video cards (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards.
Older News See Older News.
Did you know...

Mpng

mpng writes a series of numbered movie frames to png files with the specified prefix. If the ray_trace_frames variable is non-zero, these frames will be ray-traced. This operation can take several hours for a long movie.

Be sure to disable cache_frames when issuing this operation on a long movie (>100 frames) to avoid running out of memory.

Usage

mpng prefix [, first [, last [, preserve [, modal [, mode [, quiet
    [, width [, height ]]]]]]]]

Options "first" and "last" can be used to specify an inclusive interval over which to render frames. Thus, you can write a smart Python program that will automatically distribute rendering over a cluster of workstations. If these options are left at zero, then the entire movie will be rendered.

Arguments

  • prefix = string: filename prefix for saved images -- output files will be numbered and end in ".png"
  • first = integer: starting frame {default: 0 (first frame)}
  • last = integer: last frame {default: 0 (last frame)}
  • ..→
A Random PyMOL-generated Cover. See Covers.