Difference between revisions of "Main Page"

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| [https://pymol.org PyMOL v3.0 has been released] on March 12, 2024.
 
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Latest revision as of 12:54, 12 March 2024

hosted by SBGridlogo2.jpg
Welcome to the PyMOL Wiki!
The community-run support site for the PyMOL molecular viewer.
To request a new account, email SBGrid at: accounts (@) sbgrid dot org
Quick Links
Tutorials Table of Contents Commands
Script Library Plugins FAQ
Gallery | Covers PyMOL Cheat Sheet (PDF) Getting Help
News & Updates
Official Release PyMOL v3.0 has been released on March 12, 2024.
New Plugin CavitOmiX calculate Catalophore™ cavities, predict protein structures with OpenFold by NVIDIA-BioNeMo, ESMFold and retrieve Alphafold models
Official Release PyMOL v2.5 has been released on May 10, 2021.
Python 3 New Python 3 compatibility guide for scripts and plugins
POSF New PyMOL fellowship announced for 2022-2023
Tutorial Plugins Tutorial updated for PyQt5
New Plugin PICv is a new plugin for clustering protein-protein interactions and visualization with available data from PDBe
Selection keywords New polymer.protein and polymer.nucleic selection keywords. Thanks everyone who participated in the poll!
Plugin Update MOLE 2.5 is an updated version of channel analysis software in PyMOL
New Script dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
Older News See Older News.
Did you know...

PoseView

Type Python Module
Download poseview.py
Author(s) Thomas Holder
License BSD-2-Clause
This code has been put under version control in the project Pymol-script-repo

poseview is a PyMOL wrapper for the PoseView program. PoseView generates 2D structure-diagrams of protein-ligand complexes.

Setup

You need the poseview executable and a valid license file. Example for a launcher script which should be saved to /usr/bin/poseview so that PyMOL can find it:

#!/bin/sh
POSEVIEW_PATH="/opt/poseview-1.1.2-Linux-x64"
export BIOSOLVE_LICENSE_FILE="$POSEVIEW_PATH/poseview.lic"
exec "$POSEVIEW_PATH/poseview" "$@"

Usage

poseview [ ligand [, protein [, width [, height [, filename [, exe [, state ]]]]]]]

Example

fetch 1a00, async=0
poseview chain C and resn HEM

Poseviewscreenshot.png

A Random PyMOL-generated Cover. See Covers.