Difference between revisions of "Main Page"

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| [https://pymol.org PyMOL v2.4 has been released] on May 20, 2020.
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| [https://pymol.org PyMOL v3.0 has been released] on March 12, 2024.
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| [[CavitOmiX|CavitOmiX]] calculate [https://innophore.com Catalophore™ cavities], predict protein structures with [https://www.nvidia.com/en-us/gpu-cloud/bionemo OpenFold by NVIDIA-BioNeMo], [https://ai.facebook.com/blog/protein-folding-esmfold-metagenomics/ ESMFold] and retrieve [https://www.deepmind.com/research/highlighted-research/alphafold Alphafold] models
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| [https://pymol.org PyMOL v2.5 has been released] on May 10, 2021.
 
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| New [[2to3|Python 3 compatibility guide]] for scripts and plugins
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! POSF
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| [https://pymol.org/fellowship New PyMOL fellows announced for 2018-2019]
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| [https://pymol.org/fellowship New PyMOL fellowship announced for 2022-2023]
 
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| [[ProBiS_H2O|ProBiS H2O]] is a new plugin for identification of conserved waters in protein structures.
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| [[PICv|PICv]] is a new plugin for clustering protein-protein interactions and visualization with available data from PDBe
 
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! Selection keywords
 
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Latest revision as of 12:54, 12 March 2024

hosted by SBGridlogo2.jpg
Welcome to the PyMOL Wiki!
The community-run support site for the PyMOL molecular viewer.
To request a new account, email SBGrid at: accounts (@) sbgrid dot org
Quick Links
Tutorials Table of Contents Commands
Script Library Plugins FAQ
Gallery | Covers PyMOL Cheat Sheet (PDF) Getting Help
News & Updates
Official Release PyMOL v3.0 has been released on March 12, 2024.
New Plugin CavitOmiX calculate Catalophore™ cavities, predict protein structures with OpenFold by NVIDIA-BioNeMo, ESMFold and retrieve Alphafold models
Official Release PyMOL v2.5 has been released on May 10, 2021.
Python 3 New Python 3 compatibility guide for scripts and plugins
POSF New PyMOL fellowship announced for 2022-2023
Tutorial Plugins Tutorial updated for PyQt5
New Plugin PICv is a new plugin for clustering protein-protein interactions and visualization with available data from PDBe
Selection keywords New polymer.protein and polymer.nucleic selection keywords. Thanks everyone who participated in the poll!
Plugin Update MOLE 2.5 is an updated version of channel analysis software in PyMOL
New Script dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
Older News See Older News.
Did you know...

Stick ball

== Overview ==

This setting is deprecated in v1.5 and later as it is always enabled.

The setting "stick_ball" controls whether bonded atoms are shown simply as joined sticks (set stick_ball, off) or as traditional "ball-and-stick" representation (set stick_ball, on). Note that simply setting stick_ball on will result in balls with the same radius as the sticks and so will appear only slightly different (the joins will be smoother).

Settings

set stick_ball, on   # displays atoms as balls joined by sticks
set stick_ball, off  # displays only connected sticks

set stick_ball_ratio, 1.7 # change the radius of the balls

Examples

Open the images to actually see the details!

  • stick_ball, off

  • stick_ball, on

  • stick_ball "on" with stick_ball_ratio at 1.5

A Random PyMOL-generated Cover. See Covers.


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