Difference between revisions of "Main Page"

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| [https://pymol.org PyMOL v2.4 has been released] on May 20, 2020.
 
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Revision as of 04:38, 20 May 2020

hosted by SBGridlogo2.jpg
Welcome to the PyMOL Wiki!
The community-run support site for the PyMOL molecular viewer.
To request a new account, email SBGrid at: accounts (@) sbgrid dot org
Quick Links
Tutorials Table of Contents Commands
Script Library Plugins FAQ
Gallery | Covers PyMOL Cheat Sheet (PDF) Getting Help
News & Updates
Official Release PyMOL v2.4 has been released on May 20, 2020.
Python 3 New Python 3 compatibility guide for scripts and plugins
Official Release PyMOL v2.3 has been released on February 11, 2019.
POSF New PyMOL fellows announced for 2018-2019
Tutorial Plugins Tutorial updated for PyQt5
New Plugin ProBiS H2O is a new plugin for identification of conserved waters in protein structures.
Selection keywords New polymer.protein and polymer.nucleic selection keywords. Thanks everyone who participated in the poll!
Plugin Update MOLE 2.5 is an updated version of channel analysis software in PyMOL
New Script dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
Older News See Older News.
Did you know...

Get View

get_view returns and optionally prints out the current view information in a format which can be embedded into a command script and can be used in subsequent calls to set_view.

If a log file is currently open, get_view will not write the view matrix to the screen unless the "output" parameter is 2.

This command is very useful for saving the orientation of a scene for later. Authors of molecular movies may find this command very powerful.

USAGE

get_view

PYMOL API

cmd.get_view(output=1, quiet=1)
   
my_view = cmd.get_view()

output control:

  • 0 = output matrix to screen
  • 1 = don't output matrix to screen
  • 2 = force output to screen even if log file is open
  • 3 = return formatted string instead of a list

API USAGE

cmd.get_view(0) # zero option suppresses output (LEGACY approach)
cmd.get_view(quiet=1) # suppresses output using PyMOL's normal "quiet" parameter.

NOTES

Contents of the view matrix

  • 0 - 8 = column-major 3x3 matrix ..→
A Random PyMOL-generated Cover. See Covers.