Main Page

hosted by

Welcome to the PyMOL Wiki!

The community-run support site for the PyMOL molecular viewer.

To request a new account, email SBGrid at: accounts (@) sbgrid dot org

Quick Links

Tutorials	Table of Contents	Commands
Script Library	Plugins	FAQ
Gallery | Covers	PyMOL Cheat Sheet (PDF)	Getting Help

News & Updates New Plugin ProBiS H2O is a new plugin for identification of conserved waters in protein structures. Official Release PyMOL v2.1 has been released on March 13, 2018. Selection keywords New polymer.protein and polymer.nucleic selection keywords. Thanks everyone who participated in the poll! Plugin Update MOLE 2.5 is an updated version of channel analysis software in PyMOL New Script dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons New Plugin LiSiCA is a new plugin for 2D and 3D ligand based virtual screening using a fast maximum clique algorithm. New Plugin PyANM is a new plugin for easier Anisotropic Network Model (ANM) building and visualising in PyMOL. New Plugin Bondpack is a collection of PyMOL plugins for easy visualization of atomic bonds. New Plugin MOLE 2.0 is a new plugin for rapid analysis of biomacromolecular channels in PyMOL. 3D using Geforce PyMOL can now be visualized in 3D using Nvidia GeForce video cards (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards. Older News See Older News.

Did you know... Spectrumany Type Python Module Download spectrumany.py Author(s) Thomas Holder License BSD-2-Clause This code has been put under version control in the project Pymol-script-repo Included in psico This command or function is available from psico, which is a PyMOL extension. Module psico.viewing Coloring with a gradient of different green shades This script works similar to the spectrum command, but instead of predefined palettes, any color sequence can be used. The color sequence is given by a space separated list of colors, so palette "red_white_blue" is the same as color sequence "red white blue". Example fetch 2x19 # these two produce the same result spectrum count, red_white_blue, chain B spectrumany count, red white blue, chain B # gradient of different green colors spectrumany count, smudge palegreen limegreen limon green forest, chain B

A Random PyMOL-generated Cover. See Covers.