Difference between revisions of "Commands"
Jump to navigation
Jump to search
Line 5: | Line 5: | ||
You can get a list of some common commands by typing "help commands" into the pymol command line. Typing this in to version 1.1r1 returns the following: | You can get a list of some common commands by typing "help commands" into the pymol command line. Typing this in to version 1.1r1 returns the following: | ||
− | + | *INPUT/OUTPUT | |
− | + | **[[load]] | |
− | + | **[[save]] | |
− | + | **[[delete]] | |
− | + | **[[quit]] | |
− | + | ||
− | + | *VIEW | |
− | + | **[[turn]] | |
− | + | **[[move]] | |
− | + | **[[clip]] | |
− | + | **[[rock]] | |
− | + | **[[show]] | |
− | + | **[[hide]] | |
− | + | **[[enable]] | |
− | + | **[[disable]] | |
− | + | **[[reset]] | |
− | + | **[[refresh]] | |
− | + | **[[rebuild]] | |
− | + | **[[zoom]] | |
− | + | **[[origin]] | |
− | + | **[[orient]] | |
− | + | **[[view]] | |
− | + | **[[get_view]] | |
− | + | **[[set_view]] | |
− | + | ||
− | + | *MOVIES | |
− | + | **[[mplay]] | |
− | + | **[[mstop]] | |
− | + | **[[mset]] | |
− | + | **[[mdo]] | |
− | + | **[[mpng]] | |
+ | **[[mmatrix]] | ||
+ | **[[frame]] | ||
+ | **[[rewind]] | ||
+ | **[[middle]] | ||
+ | **[[ending]] | ||
+ | **[[forward]] | ||
+ | **[[backward]] | ||
+ | |||
+ | *IMAGING | ||
+ | **[[png]] | ||
+ | **[[mpng]] | ||
+ | |||
+ | *RAY TRACING | ||
+ | **[[ray]] | ||
+ | |||
+ | *MAPS | ||
+ | **[[isomesh]] | ||
+ | **[[isodot]] | ||
+ | |||
+ | *DISPLAY | ||
+ | **[[cls]] | ||
+ | **[[viewport]] | ||
+ | **[[splash]] | ||
+ | |||
+ | *SELECTIONS | ||
+ | **[[select]] | ||
+ | **[[mask]] | ||
+ | |||
+ | *SETTINGS | ||
+ | **[[set]] | ||
+ | **[[button]] | ||
+ | |||
+ | *ATOMS | ||
+ | **[[alter]] | ||
+ | **[[alter_state]] | ||
+ | |||
+ | *EDITING | ||
+ | **[[create]] | ||
+ | **[[replace]] | ||
+ | **[[remove]] | ||
+ | **[[h_fill]] | ||
+ | **[[remove_picked]] | ||
+ | **[[edit]] | ||
+ | **[[bond]] | ||
+ | **[[unbond]] | ||
+ | **[[h_add]] | ||
+ | **[[fuse]] | ||
+ | **[[undo]] | ||
+ | **[[redo]] | ||
+ | **[[protect]] | ||
+ | **[[cycle_valence]] | ||
+ | **[[attach]] | ||
+ | |||
+ | *FITTING | ||
+ | **[[fit]] | ||
+ | **[[rms]] | ||
+ | **[[rms_cur]] | ||
+ | **[[pair_fit]] | ||
+ | **[[intra_fit]] | ||
+ | **[[intra_rms]] | ||
+ | **[[intra_rms_cur]] | ||
+ | |||
+ | *COLORS | ||
+ | **[[color]] | ||
+ | **[[set_color]] | ||
+ | |||
+ | *HELP | ||
+ | **[[help]] | ||
+ | **[[commands]] | ||
+ | |||
+ | *DISTANCES | ||
+ | **[[dist]] | ||
+ | |||
+ | *STEREO | ||
+ | **[[stereo]] | ||
+ | |||
+ | *SYMMETRY | ||
+ | **[[symexp]] | ||
+ | |||
+ | *SCRIPTS | ||
+ | **[[@]] | ||
+ | **[[run]] | ||
+ | |||
+ | *LANGUAGE | ||
+ | **[[alias]] | ||
+ | **[[extend]] | ||
[[Category:Commands]] | [[Category:Commands]] |
Revision as of 07:43, 27 April 2009
Commands are functions in pymol that are used for viewing, manipulating, and storing molecules.
The PyMOLWiki has a complete list of commands in PyMOL. Just check out the Commands' category page.
You can get a list of some common commands by typing "help commands" into the pymol command line. Typing this in to version 1.1r1 returns the following:
- VIEW
- RAY TRACING
- ATOMS
- EDITING
- DISTANCES
- STEREO
- SYMMETRY