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• Supercell
  ...|right|Example with 2 unit cells in c-direction, created with: supercell 1,1,2,2x19]] supercell 2,1,1, 2x19, green
  900 bytes (121 words) - 04:24, 1 July 2020
• Cartoon cylindrical helices
  * 1: Curved helices (since PyMOL 2.5) set cartoon_cylindrical_helices, 1
  1 KB (139 words) - 04:25, 30 September 2020
• Sphere quality
  # the default value is 1 Larger values of <integer> result in higher quality sphere rendering. Values >1 may result in poor [[:Category:Performance|performance]] during real-time r
  882 bytes (113 words) - 16:56, 25 July 2023
• Ray texture
  #Matte 1 #Swirl 1
  781 bytes (113 words) - 16:10, 22 August 2023
• Cgo transparency
  ...e (float) number between 0 and 1 (with 0 meaning the object is opaque, and 1 == invisible).
  482 bytes (66 words) - 22:53, 13 February 2022
• Get fastastr
  cmd.get_fastastr(string selection='all', int state=-1, int quiet=1)
  576 bytes (65 words) - 13:49, 30 July 2020
• CGO Shapes
  cap1, cap2 # should the ends be solid (1) or open (0)? plain_sphere = [cgo.SPHERE, 0, 0, 0, 1]
  3 KB (354 words) - 17:41, 15 February 2022
• Valence
  Image:PHE_valence_1_mode_1.png|set valence, 1<br>set valence_mode, 1<br>#bonds inside Image:PHE_valence_1_mode_0.png|set valence, 1<br>set valence_mode, 0<br>#bonds centered
  2 KB (330 words) - 14:51, 5 October 2023
• Attach
  attach O, 1, 1 # adds an Oxygen atom to picked atom.
  582 bytes (75 words) - 13:04, 6 December 2021
• CBC
  util.cbc(selection='(all)',first_color=7,quiet=1,legacy=0,_self=cmd) * quiet defaults to 1
  918 bytes (130 words) - 14:27, 17 November 2009
• Color By Mutations
  aa_3l = {'ALA':0, 'ARG':1, 'ASN':2, 'ASP':3, 'CYS':4, 'GLN':5, 'GLU':6, 'GLY':7, 'HIS':8, 'ILE':9, 'L ..., -1, -1, -1, 0, -2, -2, -2, -1, -2, -3, -1, 1, 0, -4, -3, -1, -2, -1, -1, -6],
  10 KB (1,617 words) - 02:52, 20 June 2020
• Get View
  cmd.get_view(output=1, quiet=1) *1 = don't output matrix to screen
  1 KB (225 words) - 14:28, 12 September 2020
• Examples of nucleic acid cartoons
  set cartoon_ladder_mode, 1 # sticks from backbone into nucleotide set cartoon_ring_finder, 1 # ribose and base rings (not displayed since ring mode 0)
  6 KB (837 words) - 18:31, 27 January 2010
• Isosurface
  * level = the contour level. (default=1.0) * state = the state into which the object should be loaded (default=1) (set state=-2 to append new surface as a new state)
  2 KB (276 words) - 16:50, 2 June 2021
• Overview of nucleic acid cartoons
  |align="center" | 1 || simple plane for ribose and base rings covering area between ring bonds ...ose and base rings covering area inside sticks (slightly smaller than mode 1)
  5 KB (769 words) - 18:05, 22 January 2016
• Jupyter
  == Example 1: Same interpreter, same thread == cmd.png('/tmp/foo.png', ray=1)
  3 KB (392 words) - 14:27, 27 October 2021
• Annotate v
  ''Version: 1.0'' Currently supports '''Kabat, Chothia, Contact, IMGT'''¹
  3 KB (398 words) - 23:32, 28 February 2021
• Color cbcobj
  color_cbcobj selection, [first_color=0..n, [quiet=0/1 ]] PyMOL>color_cbcobj all and elem C,2,1
  4 KB (430 words) - 08:39, 27 October 2022
• SuperSym
  ...SuperSymExample.png|300px|thumb|right|Symmetry partners for 1hpv showing 6-1 screw axis]] This plugin was developed in 2010 for PyMOL version 1.2r1 and has not been updated since.
  5 KB (689 words) - 05:41, 1 July 2020
• Intra fit
  print cmd.intra_fit("1i8e////CA", 1) [-1.0, 1.1934459209442139, 1.2950557470321655, 0.71329855918884277,
  2 KB (222 words) - 05:39, 12 June 2017

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