Difference between revisions of "User:Sbliven/Sandbox"
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== Pymol Inclusion == | == Pymol Inclusion == | ||
+ | Through Template: | ||
+ | {{Template:PymolScriptRepoInclude|removealt.py}} | ||
+ | |||
Direct: | Direct: | ||
− | <include src="https://raw.github.com/Pymol-Scripts/Pymol-script-repo/master/ | + | <include src="https://raw.github.com/Pymol-Scripts/Pymol-script-repo/master/removealt.py" highlight="python" /> |
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Revision as of 08:10, 30 October 2015
Pymol Inclusion
Through Template: ERROR in secure-include.php: could not read the given src URL https://raw.github.com/Pymol-Scripts/Pymol-script-repo/master/{{{1}}}
This code has been put under version control in the project Pymol-script-repo.
Direct:
from pymol import cmd def removealt(obj="(all)", keep="A"): """ removeAlt -- remove all alternate location-atoms not of altloc "keep" from object. input: obj -- the object(s) to remove the atoms frmo keep -- which type of alt loc to keep output: none -- removes atoms examples: removeAlt # remove all altLocations that aren't altloc A removeAlt pdbID, C # remove all but C altlocations from pdbID """ # select & remove all non A altlocs remStr = "%s and not (alt ''+%s)" % (obj, keep) cmd.remove(remStr) # reset the PDB information cmd.alter(obj, "alt=''") cmd.extend("removealt", removealt)