Difference between revisions of "Update"
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| − | + | '''update''' transfers coordinates from one selection to another. | |
| − | |||
===USAGE=== | ===USAGE=== | ||
| − | + | update (target-selection),(source-selection) | |
| − | + | ||
| + | ===PYMOL API=== | ||
| + | <source lang="python"> | ||
| + | cmd.update( target ,source [,target_state=0 [,source_state=0 [,matchmaker=1 [,quiet=1 [,_self=cmd ]]]]]] ) | ||
| + | </source> | ||
| + | |||
| + | === ARGUMENTS === | ||
| + | |||
| + | * '''matchmaker''' = integer: how to match atom pairs {default: 1} | ||
| + | ** 0: assume that atoms are stored in the identical order | ||
| + | ** 1: match based on all atom identifiers (segi,chain,resn,resi,name,alt) | ||
| + | ** 2: match based on ID | ||
| + | ** 3: match based on rank | ||
| + | ** 4: match based on index | ||
| + | |||
| + | ''Note that the meaning of matchmaker=0 differs in [[update]] and [[fit]] (also [[rms]], [[rms_Cur|rms_cur]], ...)!'' | ||
| + | |||
===EXAMPLES=== | ===EXAMPLES=== | ||
| − | + | update target,(variant) | |
| − | + | ||
===NOTES=== | ===NOTES=== | ||
| − | + | Currently, this applies across all pairs of states. Fine control will be added later. | |
| − | + | ||
| − | |||
===SEE ALSO=== | ===SEE ALSO=== | ||
| − | + | [[Cmd load]] | |
| − | |||
| − | [[Category:Commands| | + | [[Category:Commands|Update]] |
Latest revision as of 02:33, 24 January 2018
update transfers coordinates from one selection to another.
USAGE
update (target-selection),(source-selection)
PYMOL API
cmd.update( target ,source [,target_state=0 [,source_state=0 [,matchmaker=1 [,quiet=1 [,_self=cmd ]]]]]] )
ARGUMENTS
- matchmaker = integer: how to match atom pairs {default: 1}
- 0: assume that atoms are stored in the identical order
- 1: match based on all atom identifiers (segi,chain,resn,resi,name,alt)
- 2: match based on ID
- 3: match based on rank
- 4: match based on index
Note that the meaning of matchmaker=0 differs in update and fit (also rms, rms_cur, ...)!
EXAMPLES
update target,(variant)
NOTES
Currently, this applies across all pairs of states. Fine control will be added later.