Uniprot features
Jump to navigation
Jump to search
The printable version is no longer supported and may have rendering errors. Please update your browser bookmarks and please use the default browser print function instead.
Type | Python Module |
---|---|
Download | uniprot_features.py |
Author(s) | Thomas Holder |
License | BSD-2-Clause |
This code has been put under version control in the project Pymol-script-repo |
uniprot_features fetches the sequence annotation (features) from uniprot.org and create named selections for each feature.
Requires residue numbering (resi) to match uniprot sequence!
Usage
uniprot_features uniprot_id [, selection [, withss [, prefix ]]]
Example
Show the active site of human pepsin A:
fetch 1flh, async=0
# fix residue numbering to match uniprot sequence
alter all, resi=resv+62
# create selections
uniprot_features PEPA_HUMAN
# show sticks for active site
as cartoon
set cartoon_side_chain_helper
show sticks, feature_active_site
zoom feature_active_site