Difference between revisions of "Uniprot features"
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m (fix example (uniprot name)) |
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| Line 25: | Line 25: | ||
# create selections | # create selections | ||
| − | uniprot_features | + | uniprot_features PEPA4_HUMAN |
# show sticks for active site | # show sticks for active site | ||
Revision as of 07:20, 18 July 2012
| Type | Python Module |
|---|---|
| Download | uniprot_features.py |
| Author(s) | Thomas Holder |
| License | BSD-2-Clause |
| This code has been put under version control in the project Pymol-script-repo | |
uniprot_features fetches the sequence annotation (features) from uniprot.org and create named selections for each feature.
Requires residue numbering (resi) to match uniprot sequence!
Usage
uniprot_features uniprot_id [, selection [, withss [, prefix ]]]
Example
Show the active site of human pepsin A:
fetch 1flh, async=0
# fix residue numbering to match uniprot sequence
alter all, resi=resv+62
# create selections
uniprot_features PEPA4_HUMAN
# show sticks for active site
as cartoon
set cartoon_side_chain_helper
show sticks, feature_active_site
zoom feature_active_site