Talk:Normalize ccp4 maps
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Discussions about isolevel discrepancy between PyMOL and Coot
- https://www.jiscmail.ac.uk/cgi-bin/webadmin?A1=ind1506&L=COOT&D=0#3
- https://www.jiscmail.ac.uk/cgi-bin/webadmin?A1=ind1506&L=ccp4bb&D=0#16
PyMOL normalizes across the data grid in the ccp4 file, not across the unit cell. Better options might be:
- normalize across the unit cell
- not to normalize at all (change the default of normalize_ccp4_maps to off)
- normalize based on AMEAN and ARMS reported in the ccp4 map header