Difference between revisions of "TOPTOC"

From PyMOLWiki
Jump to navigation Jump to search
Line 62: Line 62:
 
## [[:Category:Scripting Example Scripts|Example Scripts]]
 
## [[:Category:Scripting Example Scripts|Example Scripts]]
 
## [[:Category:Scripting Script Library|Script Library]]
 
## [[:Category:Scripting Script Library|Script Library]]
 +
# [[:Category:Scripting|Scripting]]
 +
## [[Example Scripts|Example Scripts]]
 +
## [[:Category:Script Library|Script Library]]
 
# [[:Category:Plugins|Plugins]]
 
# [[:Category:Plugins|Plugins]]
 
## [[:Category:Plugins Electrostatics and Energy Minimization| How to do electrostatics and energy minimization.]]
 
## [[:Category:Plugins Electrostatics and Energy Minimization| How to do electrostatics and energy minimization.]]

Revision as of 17:16, 6 May 2005

Section Layout

Please see Discussion for more thoughts on the site organizaiton.

PyMolWiki Top-Level Table Of Contents

  1. News
  2. Frequently Asked Questions
  3. Brag -- show off your best images or movies.
    1. Discussion
    2. PyMol Beta
  4. Technical Issues
    1. Installation
      1. Linux
      2. MAC
      3. Windows
  5. Launching PyMOL
    1. Command Line Options
    2. Launching From a Script
  6. Using PyMol
    1. Mouse Controls
    2. Objects and Selections
      1. Working with Objects
      2. Working with Selections
      3. Selector Quick Reference
        1. Single-word Selectors
        2. Property Selectors
        3. Selection Algebra
        4. Selection Macros
      4. Representations
        1. Lines
        2. Sticks
        3. Cartoon
        4. Surface
        5. Mesh
        6. Spheres
        7. Dots
      5. Color
      6. Displaying biochemical properties
    3. Display Settings
    4. Stereo 3D Display -- wrong place
      1. Hardware Options -- wrong place?
      2. Linux XFree86 Configuration -- wrong place
    5. Scenes
    6. Mouse Settings
    7. Wizards
    8. Ray_Tracing
    9. Settings Reference
    10. Movies and Animations
    11. Structure Alignment
    12. Structure Alignment Editor
  7. PyMol Commands
  8. Advanced Issues
    1. Modeling and editing structures
      1. Editing Atoms
      2. Molecular sculpting
      3. Homology modeling
    2. Image Manipulation
      1. labels
      2. Photoshop/GIMP
      3. Stereo Figures
      4. Publication-quality images
  9. Scripting
    1. Example Scripts
    2. Script Library
  10. Scripting
    1. Example Scripts
    2. Script Library
  11. Plugins
    1. How to do electrostatics and energy minimization.
      1. APBS Plugin
    2. rtools
    3. Tutorial on writing plugins
    4. Others
  12. High-Level Applications
    1. Crystallography Applications
      1. Symmetry
      2. Electron Density
    2. NMR Applications
      1. Working with Structure Families
      2. Superimposition and RMSD
      3. NMR Restraints and Analysis
  13. Third Party Software
    1. PovRay
    2. Movies
    3. Codecs
  14. Python Integration
  15. PyMol_Integration -- adding pymol to other projects (eg OpenGL Object Renderer)
    1. Nuccyl -- Nuccyl is a great PyMol extension
    2. Arbitrary_Graphics_Objects
  16. Uncategorized For new pages, misplaced pages, etc.

Tree 02:09, 16 Feb 2005 (CST)

Retrieved from "http://pymolwiki.org/index.php?title=TOPTOC&oldid=715"