Difference between revisions of "TOPTOC"

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## [[:Category:Plugins Tutorial|Tutorial on writing plugins]]
 
## [[:Category:Plugins Tutorial|Tutorial on writing plugins]]
 
## [[:Category:Plugins Others| Others]]
 
## [[:Category:Plugins Others| Others]]
−
# [[:Category:High-Level Applications|High-Level Applications]]
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# High-Level Applications
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## [[:Category:High-Level Applications Crystallography Applications|Crystallography Applications]]
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## Crystallography Applications
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### [[:Category:High-Level Applications Symmetry|Symmetry]]
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### Symmetry|Symmetry
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### [[:Category:High-Level Applications Electron Density|Electron Density]]
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### Electron Density
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## [[:Category:High-Level Applications NMR Applications|NMR Applications]]
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## NMR Applications
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### [[:Category:High-Level Applications NMR Applications Working with a Family of Structures|Working with Structure Families]]
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### Working with Structure Families
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### [[:Category:High-Level Applications NMR Applications Superimposition and RMSD|Superimposition and RMSD]]
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### Superimposition and RMSD
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### [[:Category:High-Level Applications NMR Applications NMR Restraints Analysis|NMR Restraints and Analysis]]
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### NMR Restraints and Analysis
 
# [[:Category:Third Party Software|Third Party Software]]
 
# [[:Category:Third Party Software|Third Party Software]]
 
## [[:Category:PovRay|PovRay]]
 
## [[:Category:PovRay|PovRay]]

Revision as of 09:42, 12 May 2005

Section Layout

Please see Discussion for more thoughts on the site organizaiton.

PyMolWiki Top-Level Table Of Contents

  1. News
  2. Frequently Asked Questions
  3. Brag -- show off your best images or movies.
    1. Discussion
    2. PyMol Beta
  4. Technical Issues
    1. Installation
      1. Linux
      2. MAC
      3. Windows
  5. Launching PyMOL
    1. Command Line Options
    2. Launching From a Script
  6. Using PyMol
    1. Mouse Controls
    2. Objects and Selections
      1. Working with Objects
      2. Working with Selections
      3. Selector Quick Reference
        1. Single-word Selectors
        2. Property Selectors
        3. Selection Algebra
        4. Selection Macros
      4. Representations
        1. Lines
        2. Sticks
        3. Cartoon
        4. Surface
        5. Mesh
        6. Spheres
        7. Dots
      5. Color
      6. Displaying biochemical properties
    3. Stereo 3D Display -- wrong place
      1. Linux XFree86 Configuration -- wrong place
    4. Scenes
    5. Mouse Settings
    6. Wizards
    7. Ray_Tracing
    8. Settings Reference
    9. Movies and Animations
    10. Structure Alignment
    11. Structure Alignment Editor
  7. PyMol Commands
  8. Advanced Issues
    1. Modeling and editing structures
      1. Editing Atoms
      2. Molecular sculpting
      3. Homology modeling
    2. Image Manipulation
      1. labels
      2. Photoshop/GIMP
      3. Stereo Figures
      4. Publication-quality images
  9. Scripting
    1. Example Scripts
    2. Script Library
  10. Plugins
    1. How to do electrostatics and energy minimization.
      1. APBS Plugin
    2. rtools
    3. Tutorial on writing plugins
    4. Others
  11. High-Level Applications
    1. Crystallography Applications
      1. Symmetry|Symmetry
      2. Electron Density
    2. NMR Applications
      1. Working with Structure Families
      2. Superimposition and RMSD
      3. NMR Restraints and Analysis
  12. Third Party Software
    1. PovRay
    2. Movies
    3. Codecs
  13. Python Integration
  14. PyMol_Integration -- adding pymol to other projects (eg OpenGL Object Renderer)
    1. Nuccyl -- Nuccyl is a great PyMol extension
    2. Arbitrary_Graphics_Objects
  15. Uncategorized For new pages, misplaced pages, etc.

Tree 02:09, 16 Feb 2005 (CST)

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