TMalign
Jump to navigation
Jump to search
The printable version is no longer supported and may have rendering errors. Please update your browser bookmarks and please use the default browser print function instead.
| Type | Python Module |
|---|---|
| Download | tmalign.py |
| Author(s) | Thomas Holder |
| License | BSD |
| This code has been put under version control in the project Pymol-script-repo | |
tmalign is a python module (or script) that provides wrappers to TMalign, TMscore and MMalign. The executables can be downloaded from http://zhanglab.ccmb.med.umich.edu/TM-align/ and should be saved to any directory in PATH.
Usage
tmalign mobile, target [, args [, exe [, ter [, transform [, object ]]]]]
tmscore and mmalign usage is equivalent.
Examples
fetch 2xwu 2x19 3gjx, async=0
# TMscore example
tmscore 2x19 and chain B, 2xwu and chain B
# TMalign example with alignment object
tmalign 3gjx and chain A, 2xwu and chain B, object=aln
# full path to executable
mmalign 3gjx, 2x19, exe=/usr/local/src/TM/MMalign