Difference between revisions of "Super"
Jump to navigation
Jump to search
| Line 1: | Line 1: | ||
| − | + | ||
'''super''' aligns two selections. '''super''' is more robust and accurate than '''align'''. For syntax, see [[align]]. | '''super''' aligns two selections. '''super''' is more robust and accurate than '''align'''. For syntax, see [[align]]. | ||
Revision as of 14:45, 17 November 2009
super aligns two selections. super is more robust and accurate than align. For syntax, see align.
Algorithm Details
super does a sequence-independent structure-based dynamic programming alignment followed by a series of refinement cycles intended to improve the fit by eliminating pairing with high relative variability (e.g. >2 standard deviations from the cycle's mean deviance).
Caveats
- If super ever tells you no matched atoms, then instead of
super p1, p2
try
super p1 & alt A+'', p2 & alt B+''