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- 15:09, 19 January 2023 diff hist -11 Get Title →PYMOL API: change to get_title API (this was apparently copied from the set_title page) current
- 15:08, 19 January 2023 diff hist 0 Get Title →USAGE: fix typo in command name
- 17:41, 15 February 2022 diff hist +2 m CGO Shapes current
- 22:53, 13 February 2022 diff hist +482 N Cgo transparency Add more details to usage and arguments current
- 22:46, 13 February 2022 diff hist +56 CGO Shapes Add See Also section
- 22:41, 13 February 2022 diff hist +4 CGO Shapes →EXAMPLES: fix missing namespace for cgo.CONE
- 22:34, 13 February 2022 diff hist +18 CGO Shapes Add Category:CGO
- 22:33, 13 February 2022 diff hist +19 CGO Shapes Add category:CGO
- 22:31, 13 February 2022 diff hist +569 CGO Shapes →EXAMPLES: add image for the above examples
- 22:26, 13 February 2022 diff hist +53 N File:Cgo examples.jpg Assorted rendered CGO objects in PyMOL. current
- 22:20, 13 February 2022 diff hist +946 CGO Shapes Add examples and CONE
- 22:04, 13 February 2022 diff hist +1,340 N CGO Shapes Create page
- 21:50, 13 February 2022 diff hist +625 N Load CGO Create page current
- 15:46, 25 March 2020 diff hist +144 Pml →Basic usage: clarify about relative paths current
- 15:45, 25 March 2020 diff hist +57 Pml →PyMOL Script: fix fixed-width formatting
- 15:42, 25 March 2020 diff hist +14 Pml →Basic usage: fix fixed-width formatting
- 15:40, 25 March 2020 diff hist +6 Pml →Python code: Italics
- 15:39, 25 March 2020 diff hist +49 Pml →Python code: add syntax highlighting
- 15:38, 25 March 2020 diff hist +21 N Collada Create redirect current Tag: New redirect
- 15:34, 25 March 2020 diff hist +36 Pml →Handy commands to include in your scripts: add <code> tags
- 15:29, 25 March 2020 diff hist +17 N PML create redirect current Tag: New redirect
- 15:28, 25 March 2020 diff hist 0 m Pml Jaredsampson moved page PML to Pml without leaving a redirect: Consistent with other page names
- 15:26, 25 March 2020 diff hist +1,889 Pml Add syntax and handy commands sections
- 12:49, 25 March 2020 diff hist +60 Pml →PyMOL Script
- 12:48, 25 March 2020 diff hist +439 N Pml Created page with basic description
- 12:39, 25 March 2020 diff hist +8 Running Scripts →Python or Pymol?: Add link to PML page current
- 13:38, 2 October 2019 diff hist +23 Set Color Add link to missing set_object_color command page current
- 00:07, 6 December 2018 diff hist +36 File:4gms colors.png formatting for script current
- 00:04, 6 December 2018 diff hist +1,015 N File:4gms colors.png Prepared in response to a pymol-users thread from 11/30/2018-12/5/2018 about the appearance of transparency in a published figure. Script to reproduce: bg_color white fetch 4gms, async=0 # hemagglutinin selections select ha, chain A select l130, ha...
- 13:15, 8 October 2018 diff hist +184 Talk:MAC Install →Package managers: new section current
- 13:05, 8 October 2018 diff hist +51 MAC Install →Pre-compiled: Make Homebrew the recommended package manager current
- 13:01, 8 October 2018 diff hist -97 MAC Install →Pre-compiled: Update Homebrew info to reflect new location of PyMOL formula and no more need for flags in dependencies.
- 13:19, 8 March 2018 diff hist +16 Isomesh →USAGE: add units for "level" parameter
- 15:21, 15 November 2017 diff hist +253 Colorblindfriendly →Download the script and run locally: Add a "run from Github" example. current
- 16:08, 26 October 2017 diff hist +291 Colorblindfriendly →Usage: Add instructions for running as dowloaded script.
- 15:50, 26 October 2017 diff hist -1 Colorblindfriendly →Usage: update code samples and use <code> instead of <tt> tags.
- 09:51, 26 October 2017 diff hist -3 Colorblindfriendly →Requirements: update to reflect support for older PyMOLs
- 00:42, 26 October 2017 diff hist -2 m Colorblindfriendly →Usage: fix object name for consistency
- 00:41, 26 October 2017 diff hist +1,281 Colorblindfriendly →Usage: Update usage for version 0.2; Add requirements section.
- 00:17, 26 October 2017 diff hist +107 N File:Colorblindfriendly menu.png Screenshot of the color list menu added to the OpenGL GUI by the colorblindfriendly.py script in PyMOL 2.0. current
- 00:04, 26 October 2017 diff hist -35 Colorblindfriendly →Colors: show 0-255 values instead.
- 22:25, 25 October 2017 diff hist +116 Get Color Indices add reference to Get_color_index
- 22:23, 25 October 2017 diff hist +141 Get color index Add See Also and Categories current
- 22:21, 25 October 2017 diff hist +226 N Get color index Create page
- 20:26, 28 July 2017 diff hist +5 Selection Algebra →Selection Operator/Modifier Table: fix vertical line display for "or" operator
- 00:19, 16 January 2017 diff hist +47 PyMOLProbity →Description: add link to repository
- 13:48, 14 January 2017 diff hist +200 PyMOLProbity →Getting Started: Update GUI section.
- 13:41, 14 January 2017 diff hist +5 PyMOLProbity Add screenshot.
- 13:39, 14 January 2017 diff hist +247 N File:PyMOLProbity GUI.png Screenshot of the "Review Flips" tab of the PyMOLProbity plugin GUI, where flippable side chains in the selected object can be inspected, animated between unflipped (i.e. Reduce-output) and flipped orientations, and selected for future operations. current
- 01:52, 14 January 2017 diff hist +2,538 N PyMOLProbity Created page.
- 15:07, 3 October 2016 diff hist +6 Save Add COLLADA (.dae) to autodetected formats. current
- 15:42, 7 June 2016 diff hist +8 m PYMOL PATH →Contents: close <tt> tag current
- 14:01, 7 June 2016 diff hist +911 User:Jaredsampson Update current
- 13:31, 7 June 2016 diff hist +341 Linux Install →Get latest source from SVN: Add HTTP protocol as alternative to troubleshoot sf.net SVN connection.
- 01:44, 28 March 2016 diff hist +124 Cartoon →Various Transparency Levels: include mention of "extract"
- 02:19, 26 February 2016 diff hist +19 COLLADA Include first version to support COLLADA.
- 12:36, 2 December 2015 diff hist -1,602 Selection Algebra →Selection Operator/Modifier Table: converted to wiki markup and made several minor edits (e.g. periods at end of "effect" column sentences.)
- 00:28, 10 November 2015 diff hist +372 MAC Install →With xquartz intalled: This is untested, but just updating the flags to the current syntax listed in the homebrew/homebrew-science/pymol.rb formula.
- 00:19, 10 November 2015 diff hist -250 MAC Install →Switch stereo: Renamed section, and rewrote most of the content because latest homebrew install no longer switches the stereo/mono paradigm as previously described.
- 00:08, 10 November 2015 diff hist -75 MAC Install →3. Install PyMOL.: latest version doesn't require multiple install commands--everything is handled by the install script (apparently)
- 00:06, 10 November 2015 diff hist +153 MAC Install →2. Install Xquartz.: add homebrew cask option to install Xquartz
- 23:17, 29 August 2015 diff hist -1 PYMOL PATH →Contents: typo
- 15:18, 29 August 2015 diff hist +21 Plugin Manager add Plugins category
- 17:36, 13 August 2015 diff hist +40 Plane Wizard Improve handling of auto_zoom setting (store original setting, then re-set it).
- 23:22, 7 June 2015 diff hist +158 Plugins →Using Fink: Change title of section to reflect additonal package managers. Fix link for Fink, add links for MacPorts and Homebrew. Update install example to refer to pymol-py27 fink package and remove unnecessary tags.
- 17:02, 7 June 2015 diff hist +8 Pytms Correct link to raw plugin file in repo.
- 16:41, 7 June 2015 diff hist +21 Pytms Add plugins category.
- 18:52, 20 May 2015 diff hist +2,502 N Collada geometry mode Created current
- 12:21, 20 May 2015 diff hist +3 Modeling and Editing Structures →Adding and using your own fragments: clarified that editing modules/pmg_tk/skins/normal/__init__.py would add a menu item, not a hotkey.
- 10:31, 6 May 2015 diff hist -8 Mset →EXAMPLES: fixed python comments to use # instead of //
- 12:12, 16 April 2015 diff hist +161 MAC Install →3. Install PyMOL.: Added sentence to indicate the end of the installation process.
- 12:08, 16 April 2015 diff hist +31 MAC Install →1. Install homebrew.: updated homebrew install command per https://developer.github.com/changes/2014-04-25-user-content-security/
- 18:52, 29 September 2014 diff hist +3,624 N COLLADA Created page
- 17:54, 13 August 2014 diff hist -23 User:Jaredsampson
- 14:47, 13 August 2014 diff hist +128 Elbow angle →Syntax: added rationale for default limit residues current
- 15:00, 12 August 2014 diff hist +159 Cealign plugin →Comparison to PyMol: Whoops...fixed text to go with image order. Added PDB links.
- 14:49, 12 August 2014 diff hist 0 m Cealign plugin →Comparison to PyMol: switched order of images for logical flow (align, then cealign)
- 13:08, 28 July 2014 diff hist +60 Outline →Example: added "Automation" heading. Added `outfile` variable in imagemagick script, and adjusted filenames for consistency.
- 12:51, 24 July 2014 diff hist +1,644 N Outline Created page
- 12:47, 24 July 2014 diff hist +77 N File:Outline cleaned.png Cleaned-up version of Outline_composite.png, with extra outline lines erased. current
- 12:45, 24 July 2014 diff hist +53 N File:Outline composite.png Composite of Outine_base.png and Outline_overlay.png. current
- 12:42, 24 July 2014 diff hist +127 N File:Outline overlay.png Cytochrome C (3cyt) residues within 2Å of Lys85 are outlined in yellow, using `ray_trace_mode` and `ray_trace_color` settings. current
- 12:39, 24 July 2014 diff hist +46 N File:Outline base.png Surface representation of Cytochrome C (3cyt). current
- 12:50, 28 June 2014 diff hist +34 Get View →SEE ALSO: added Model_Space_and_Camera_Space
- 12:14, 28 June 2014 diff hist +5 Move current
- 09:36, 28 June 2014 diff hist 0 m View →Function Key Presets: capitalized title current
- 09:35, 28 June 2014 diff hist +15 View →VIEWS: made section title reflect contents
- 13:17, 5 June 2014 diff hist +16 Ray opaque background →Examples: eliminated abbreviation in setting name current
- 13:16, 5 June 2014 diff hist +84 Png →Transparent Backgrounds: added example of ray_opaque_background setting
- 13:11, 5 June 2014 diff hist +36 Png →DPI Setting: updated to account for integrated width, height, and ray arguments
- 13:06, 5 June 2014 diff hist +485 Png →USAGE: updated with additional parameters
- 13:01, 5 June 2014 diff hist +57 Png →PYMOL API: updated API to match `help png` output and include defaults
- 12:56, 5 June 2014 diff hist +43 Png →USAGE: added brackets and defaults for keyword arguments
- 12:52, 5 June 2014 diff hist -19 Optimize →Local optimization: moved image to top of section, added Usage heading
- 12:46, 5 June 2014 diff hist +404 Optimize →Local optimization: fixed a few typos, added default values from script, added PyMOL API section.
- 19:15, 11 April 2014 diff hist +11 Enable changed to definition list format
- 18:51, 11 April 2014 diff hist +206 Disable added examples, improved description, added default='all'
- 18:42, 11 April 2014 diff hist +443 Enable Added more examples and description of `parents` argument.
- 12:30, 9 April 2014 diff hist -1 Morph fix typo
- 11:14, 28 February 2014 diff hist +2,131 N Colorblindfriendly Added basic page for Colorblindfriendly.py script