User contributions
Jump to navigation
Jump to search
- 10:50, 9 December 2011 diff hist +52 m Centroid
- 12:50, 8 December 2011 diff hist +3 m Color by conservation d'oh
- 12:34, 8 December 2011 diff hist +27 m Color by conservation
- 12:32, 8 December 2011 diff hist +54 N File:Cbcon.png example result of coloring by conservation of sequence current
- 12:31, 8 December 2011 diff hist +2,249 N Color by conservation Created page with "= Overview = This script reads an alignment object and colors the protein objects in the alignment by the sequence conservation found in the alignment. = Example Usage = <source..."
- 12:07, 5 December 2011 diff hist +1 m Single-word Selectors →Single-word Selectors
- 12:02, 5 December 2011 diff hist +463 m Stereo Mode
- 11:54, 5 December 2011 diff hist +167 MediaWiki:Common.css
- 11:44, 5 December 2011 diff hist -14 ConnectedCloud current
- 11:17, 5 December 2011 diff hist +28 ConnectedCloud
- 11:07, 5 December 2011 diff hist +14 m FindObjectsNearby current
- 11:02, 5 December 2011 diff hist +14 m Aa codes
- 18:26, 1 December 2011 diff hist +279 N Get type Created page with "= Overview = PyMOL objects have a base type. get_type will retrieve that base type name. = Usage = <source lang="python"> # create a selection cmd.select("foo", "all") # p..." current
- 11:35, 30 November 2011 diff hist +67 User:Tlinnet →Test to fetch script from github
- 11:34, 30 November 2011 diff hist +375 Nm User:Tlinnet Created page with "Hi Troels, Here you go: == Test to fetch script from github == Https PyMOL script, user=tlinnet <pre><nowiki> <include src="https://raw.github.com/jlec/Pymol-script-repo/ma..."
- 20:47, 29 November 2011 diff hist +65 Palette Colorbars
- 12:47, 22 November 2011 diff hist +78 m Cart to frac
- 12:45, 22 November 2011 diff hist +95 Cart to frac
- 12:43, 22 November 2011 diff hist +2,167 N Cart to frac Created page with "= Overview = This script will convert the real space orthonormal cartesian coordinates of a selection to the fractional coordinates given the loaded cell symmetry. = Example = <..."
- 13:34, 18 November 2011 diff hist +117 Main Page
- 13:31, 18 November 2011 diff hist +2,316 Gallery
- 13:27, 18 November 2011 diff hist +72 N File:Abs surf.png abstracted surface colored by underlying b-factors and shown with ligand current
- 13:01, 18 November 2011 diff hist +2,463 Gallery
- 12:52, 18 November 2011 diff hist +34 N File:Gallery blob sc.png Blobby side chains on cartoon tube current
- 12:52, 18 November 2011 diff hist +24 N File:Gallery dark tube mc.png Darkened tube main chain current
- 11:31, 17 November 2011 diff hist +1 m Cartoon highlight color thanks Joris current
- 17:31, 14 November 2011 diff hist +115 Get area
- 13:23, 9 November 2011 diff hist +17 Bg rgb current
- 13:21, 9 November 2011 diff hist -1 m Origin →Example= current
- 13:21, 9 November 2011 diff hist +628 Origin
- 12:55, 9 November 2011 diff hist -25 Move
- 15:03, 8 November 2011 diff hist +11 m Main Page
- 15:03, 8 November 2011 diff hist +3,755 Older News
- 14:57, 8 November 2011 diff hist -4,230 Main Page
- 13:00, 8 November 2011 diff hist -2 m Findseq →The Code
- 12:58, 8 November 2011 diff hist +5 m Findseq →The Code
- 12:50, 8 November 2011 diff hist +52 m Save settings
- 09:09, 11 October 2011 diff hist -4 Displaying Biochemical Properties →Details
- 09:09, 11 October 2011 diff hist +2,531 Displaying Biochemical Properties →Hydrogen bonds and Polar Contacts
- 19:43, 7 October 2011 diff hist +144 Covers
- 19:41, 7 October 2011 diff hist 0 N File:Polymer physics cover.png current
- 19:41, 7 October 2011 diff hist 0 N File:Biophysical cover.png current
- 13:11, 3 October 2011 diff hist +81 Main Page
- 13:08, 3 October 2011 diff hist +2,113 N 3d pdf Created page with "= Overview = PyMOL can convert to formats (vrml2 and idtf) that can be converted to a 3D PDF (will not work with most PDF browser plugins; must be downloaded ..."
- 13:00, 3 October 2011 diff hist +50 N File:Pymol.pdf 3D PDF file made w/PyMOL, u3d converter and LaTeX. current
- 00:52, 1 October 2011 diff hist +180 Main Page
- 11:59, 30 September 2011 diff hist +84 Main Page
- 11:58, 30 September 2011 diff hist -437 Main Page
- 12:08, 29 September 2011 diff hist +203 Covers
- 12:05, 29 September 2011 diff hist +32 N File:Science 2011 16.jpg Cover of Science, Sept 16, 2011. current
- 12:42, 22 September 2011 diff hist +1,208 Get area
- 23:53, 17 September 2011 diff hist +129 Spectrum
- 23:52, 17 September 2011 diff hist +21 N File:Spectrum ex2.png example by atom count current
- 23:49, 17 September 2011 diff hist +60 N File:Spectrum example.png Shows coloring by modified b-factor as distance from origin. current
- 23:48, 17 September 2011 diff hist +2,898 N Spectrum Created page with "= Overview = Spectrum colors atoms with a spectrum of colors based on an atomic property. = Usage = <source lang="python"> spectrum [expression [, palette [, selection [..."
- 23:39, 17 September 2011 diff hist +119 Ramp New →Surface Colored by Distance from a Point
- 12:05, 16 September 2011 diff hist +89 Tiff2ccp4
- 12:04, 16 September 2011 diff hist +299 Tiff2ccp4 →Overview
- 12:02, 16 September 2011 diff hist +16,095 N Tiff2ccp4 Created page with "= Overview = This script will convert tiff stacks to CCP4 maps for reading in PyMOL. If someone knows how to determine the file's dimensions from the file itself (not the image..."
- 13:07, 14 September 2011 diff hist +2,335 N Movie fade Created page with "= Overview = This script will help fade in and out settings in a movie. Just specify the setting, it's initial value at an initial frame and it's ending value and frame. For exam..."
- 13:16, 6 September 2011 diff hist +286 Category talk:Script Library →Requests
- 17:12, 31 August 2011 diff hist +490 N Ray texture settings Created page with "= Overview = ray_texture_settings controls the wobble and wiggle settings for texturing. Playing with these settings can produce interesting effects. The values take on diff..." current
- 17:10, 31 August 2011 diff hist +22 N File:Wood.png Wooden like rendering. current
- 16:51, 31 August 2011 diff hist +42 Ray texture
- 02:29, 26 August 2011 diff hist +481 Matrix Copy →Example
- 12:45, 25 August 2011 diff hist -12 m BbPlane →The Source
- 16:04, 23 August 2011 diff hist +1,722 N Split object Created page with "split_object takes a multi-molecular object and converts it into a multi-state object. Similar to split_states but for molecules instead of states and the result of this ..."
- 09:34, 23 August 2011 diff hist +166 Surface mode →Syntax
- 13:15, 18 August 2011 diff hist +65 Get raw alignment →EXAMPLE
- 15:44, 17 August 2011 diff hist +4,411 N Focus alignment Created page with "= Overview = When aligning binding sites, it's useful to focus on a particular subset of atoms. However, alignments can go haywire when choosing non-contiguous subsets of atoms...." current
- 15:43, 17 August 2011 diff hist +23 N File:Fa2.png focused alignment after current
- 15:42, 17 August 2011 diff hist +24 N File:Fa.png focused alignment before current
- 13:36, 16 August 2011 diff hist +64 N Talk:Propka Created page with "Once this is done, please feel free to let the pymol-users know." current
- 09:05, 16 August 2011 diff hist +90 Ideas →More Ideas (Please add your own!)
- 09:13, 15 August 2011 diff hist +24 Label →Details
- 09:12, 15 August 2011 diff hist +104 Label →Settings
- 12:17, 2 August 2011 diff hist +102 Talk:Alter current
- 12:16, 2 August 2011 diff hist -800 Alter →Coloring a Viral Capsid by Distance from Core
- 12:16, 2 August 2011 diff hist +800 Ramp New →Surface Colored by Distance from a Point
- 10:30, 1 August 2011 diff hist +1 Alter →Coloring a Viral Capsid by Distance from Core
- 14:10, 29 July 2011 diff hist 0 m Alter →Coloring a Viral Capsid by Distance from Core
- 12:28, 29 July 2011 diff hist +799 Alter →Change the b values of all atoms to the distance of the atoms to a reference point
- 12:24, 29 July 2011 diff hist +38 N File:Capsid by dist.png capsid colored by distance from center current
- 12:20, 29 July 2011 diff hist +23 Alter →EXAMPLES
- 15:07, 28 July 2011 diff hist +1 Ramp New
- 15:06, 28 July 2011 diff hist +803 Ramp New →Elaborate examples
- 15:04, 28 July 2011 diff hist +28 N File:Measure.png Surface colored by distance. current
- 13:11, 18 July 2011 diff hist +20 Category:FAQ →Others current
- 13:08, 18 July 2011 diff hist 0 Label →Settings
- 12:50, 18 July 2011 diff hist +424 N Transparency mode Created page with "Transparency_mode controls how PyMOL handles transparent objects = Example Images = <gallery widths=300 heights=200> Image:Unilayer.png|Unilayer transparency Image:Multilaye..."
- 12:48, 18 July 2011 diff hist 0 N File:Multilayer.png current
- 12:48, 18 July 2011 diff hist 0 File:Unilayer.png uploaded a new version of "File:Unilayer.png" current
- 12:46, 18 July 2011 diff hist +24 N File:Unilayer.png Unilayer transparency on
- 10:05, 8 July 2011 diff hist +95 Stereo 3D Display Options →Zalman
- 09:57, 6 July 2011 diff hist +771 Cycle Valence →NOTES current
- 18:26, 5 July 2011 diff hist -14 Cycle Valence
- 16:37, 5 July 2011 diff hist +13 Cycle valence current
- 14:43, 5 July 2011 diff hist +109 Ramp New →Usage
- 18:05, 4 July 2011 diff hist 0 Smooth →NOTES
- 13:56, 22 June 2011 diff hist 0 Cealign plugin →Results