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- 19:07, 18 June 2009 diff hist +6 Main Page
- 17:18, 18 June 2009 diff hist -7 MovieSchool →Motions & Representations
- 17:16, 18 June 2009 diff hist +89 MovieSchool →Motions & Representations
- 17:13, 18 June 2009 diff hist -50 MovieSchool →Motions & Representations
- 17:09, 18 June 2009 diff hist +254 Talk:MovieSchool →Ideas: new section
- 17:08, 18 June 2009 diff hist +1 MovieSchool →mset
- 07:29, 17 June 2009 diff hist +263 Talk:MovieSchool
- 07:25, 17 June 2009 diff hist +98 MovieSchool →Basic Movie Terminology
- 07:22, 17 June 2009 diff hist +63 N File:Movies.png My diagram of how movies work. Possibly wrong. Possibly crap. current
- 20:16, 16 June 2009 diff hist +664 Scene
- 20:10, 16 June 2009 diff hist +2 MovieSchool
- 20:08, 16 June 2009 diff hist 0 MovieSchool
- 15:29, 16 June 2009 diff hist -32,750 User:Inchoate
- 15:29, 16 June 2009 diff hist +33,003 Nm MovieSchool Created page with '<center><p style="font-size: 22px; text-decoration: underline;">'''PyMOLWiki's Movie School'''</p></center> Here you will learn all the latest and greatest techniques for making...'
- 15:23, 16 June 2009 diff hist +104 User:Inchoate →Motions & Representations
- 15:20, 16 June 2009 diff hist -201 Making Movies
- 15:15, 16 June 2009 diff hist +39 User:Inchoate →Motions & Representations
- 15:10, 16 June 2009 diff hist +102 User:Inchoate →Motions & Representations
- 15:08, 16 June 2009 diff hist +2,588 User:Inchoate →Motions & Representations
- 14:09, 16 June 2009 diff hist +9 m User:Inchoate →Representations
- 14:09, 16 June 2009 diff hist +24 User:Inchoate →Representations
- 14:07, 16 June 2009 diff hist -146 User:Inchoate →Representations
- 14:05, 16 June 2009 diff hist +20 Scene buttons current
- 14:05, 16 June 2009 diff hist +701 N Scene buttons Created page with '= Overview = This setting controls whether or not PyMOL displays Scene_buttons or openGL buttons in the lower left hand corner that allows interaction with scenes. [[Image:S...'
- 14:03, 16 June 2009 diff hist +22 N File:Sb1.png Showing scene buttons. current
- 13:53, 16 June 2009 diff hist +1,100 User:Inchoate →Representations
- 13:46, 16 June 2009 diff hist +1,427 User:Inchoate →Representations
- 18:58, 15 June 2009 diff hist +167 User:Inchoate →Representations
- 18:56, 15 June 2009 diff hist +132 N Category:Scenes Created page with 'Scenes are how PyMOL stores camera positions and object activity and representation. These are powerful for making movies in PyMOL.' current
- 18:53, 15 June 2009 diff hist -8 Scene
- 18:53, 15 June 2009 diff hist +605 Scene →USAGE (newer v1.1.b4)
- 18:46, 15 June 2009 diff hist +26 Scene →USAGE (newer v1.1.b4)
- 18:44, 15 June 2009 diff hist +363 User:Inchoate →Basic Movie Terminology
- 18:38, 15 June 2009 diff hist +306 User:Inchoate →Representations
- 07:41, 15 June 2009 diff hist +51 User:Inchoate →Representations
- 07:40, 15 June 2009 diff hist +81 User:Inchoate →Camera Motions
- 00:52, 14 June 2009 diff hist +1,012 User:Inchoate →Exporting your Movie
- 00:44, 14 June 2009 diff hist -262 User:Inchoate →Camera & Object Motions
- 00:39, 14 June 2009 diff hist +162 User:Inchoate →Camera & Object Motions
- 00:21, 14 June 2009 diff hist +224 User:Inchoate →Camera & Object Motions
- 00:05, 14 June 2009 diff hist +1,521 User:Inchoate →Camera & Object Motions
- 23:51, 13 June 2009 diff hist +575 User:Inchoate →Object Motions
- 23:46, 13 June 2009 diff hist +1,518 User:Inchoate →Object Motions
- 23:13, 13 June 2009 diff hist +469 User:Inchoate →Object Motions
- 23:08, 13 June 2009 diff hist +4,267 User:Inchoate →Putting It All Together
- 22:15, 13 June 2009 diff hist +1,126 User:Inchoate
- 22:01, 13 June 2009 diff hist +119 User:Inchoate →What is a Movie?
- 21:59, 13 June 2009 diff hist +1 User:Inchoate →mset
- 18:53, 12 June 2009 diff hist +438 User:Inchoate →Chain Rider
- 18:35, 12 June 2009 diff hist +30 User:Inchoate →Chain Rider
- 18:31, 12 June 2009 diff hist +457 User:Inchoate →Simple Movie Examples
- 18:30, 12 June 2009 diff hist -455 User:Inchoate →Chain Rider
- 18:30, 12 June 2009 diff hist +457 User:Inchoate →Multiple Zooming
- 18:08, 12 June 2009 diff hist +868 User:Inchoate →Simple Movie Examples
- 17:55, 12 June 2009 diff hist -2 m User:Inchoate →Multiple Zooming
- 17:53, 12 June 2009 diff hist +1,953 User:Inchoate →Movie Making
- 17:25, 12 June 2009 diff hist +148 User:Inchoate →Very Basic Mview Syntax
- 17:19, 12 June 2009 diff hist +805 User:Inchoate →mview
- 17:12, 12 June 2009 diff hist +2,245 User:Inchoate →mview
- 16:51, 12 June 2009 diff hist +1,642 User:Inchoate →States & Frames (optional reading)
- 16:30, 12 June 2009 diff hist +49 User:Inchoate →set state
- 16:28, 12 June 2009 diff hist +169 User:Inchoate →set state
- 16:27, 12 June 2009 diff hist +1,152 User:Inchoate →frame
- 16:15, 12 June 2009 diff hist +2,200 User:Inchoate →Movie Making
- 15:55, 12 June 2009 diff hist +170 Movie panel current
- 15:53, 12 June 2009 diff hist +32 N File:Showing movie panel.jpeg Example showing the movie panel. current
- 15:52, 12 June 2009 diff hist +471 User:Inchoate →Basic Movie Terminology
- 15:46, 12 June 2009 diff hist +1,093 User:Inchoate →Basic Movie Terminology
- 15:31, 12 June 2009 diff hist +1,567 User:Inchoate
- 17:49, 11 June 2009 diff hist +961 User:Inchoate →To Do
- 17:03, 11 June 2009 diff hist +11 User:Inchoate
- 17:03, 11 June 2009 diff hist +141 Dots →Possible Other Settings current
- 14:57, 9 June 2009 diff hist +143 Main Page
- 14:53, 9 June 2009 diff hist +3,250 N FindSurfaceResidues Created page with 'thumb|right|400px|Result of $TUT/1hpv.pdb at 2.5 Ang cutoff. = Overview = This script will select (and color if requested) surface residues on an object...'
- 14:52, 9 June 2009 diff hist +45 N File:FindExRes.png Example of found exposed residues at 2.5 Ang. current
- 13:34, 9 June 2009 diff hist +151 Normalize ccp4 maps
- 13:33, 9 June 2009 diff hist +359 N Normalize ccp4 maps Created page with '= Overview = This setting controls whether or not PyMOL normalizes the values in a ccp4 map '''upon loading''. So, if your values are off, ''unset'' this option ''before'' loadi...'
- 13:32, 9 June 2009 diff hist +38 Display CCP4 Maps →User Notes
- 13:31, 9 June 2009 diff hist +285 Display CCP4 Maps
- 22:08, 8 June 2009 diff hist +93 Main Page
- 21:44, 8 June 2009 diff hist +306 Label color
- 21:43, 8 June 2009 diff hist +45 Label
- 21:42, 8 June 2009 diff hist +54 Label size
- 21:23, 8 June 2009 diff hist +1,592 Label font id
- 21:20, 8 June 2009 diff hist -418 Talk:Label
- 21:20, 8 June 2009 diff hist +434 Label
- 21:17, 8 June 2009 diff hist +9 Talk:Label →Object Properties
- 21:16, 8 June 2009 diff hist +347 Talk:Label →Object Properties
- 21:14, 8 June 2009 diff hist +961 Talk:Label
- 21:10, 8 June 2009 diff hist +16 N File:Pl.png PyMOL Labels ex. current
- 21:06, 8 June 2009 diff hist +827 Talk:Label →Examples
- 21:02, 8 June 2009 diff hist +414 Talk:Label →Settings
- 20:56, 8 June 2009 diff hist +55 Talk:Label →See Also
- 20:55, 8 June 2009 diff hist +315 Talk:Label →Examples
- 20:52, 8 June 2009 diff hist +379 Talk:Label →Settings
- 20:49, 8 June 2009 diff hist +57 Talk:Label →Overview
- 20:45, 8 June 2009 diff hist +17 N File:Ls2.png Label shadows on. current
- 20:45, 8 June 2009 diff hist +279 Talk:Label
- 20:44, 8 June 2009 diff hist +23 N File:Ls0.png Label shadows set to 0. current
- 20:42, 8 June 2009 diff hist +1,299 Talk:Label
- 20:11, 8 June 2009 diff hist +1,077 Talk:Label
- 19:58, 8 June 2009 diff hist +233 Label →COLOR
- 22:39, 6 June 2009 diff hist +88 Movie.roll current
- 22:38, 6 June 2009 diff hist +430 N Movie.roll Created page with '= Overview = This function will perform a movie roll--a 360 rotation of the camera about the scene--from the start frame to the end frame specified. So, if you specify fewer fra...'
- 22:37, 6 June 2009 diff hist +158 N Category:Movies Created page with 'PyMOL is getting better and better at helping users make complex movies with rich features. The pages related to making animated movies are categorized here.' current
- 17:42, 4 June 2009 diff hist +56 Pseudoatom
- 17:30, 4 June 2009 diff hist +524 N Movie panel Created page with '= Overview = The Movie_panel is a time-line view (placed at the bottom of the screen when activated) that the user can interact with to more easily produce movies. A frame c...'
- 17:29, 4 June 2009 diff hist +20 Practical Pymol for Beginners
- 17:29, 4 June 2009 diff hist +20 m States current
- 17:28, 4 June 2009 diff hist +20 Ray
- 17:28, 4 June 2009 diff hist +20 EMovie
- 17:28, 4 June 2009 diff hist +21 Movie loop current
- 17:28, 4 June 2009 diff hist +20 Software Codecs current
- 17:28, 4 June 2009 diff hist +20 Making Movies
- 17:06, 4 June 2009 diff hist +19 Pickable current
- 17:06, 4 June 2009 diff hist +19 Button
- 17:05, 4 June 2009 diff hist +19 Mouse Settings current
- 17:05, 4 June 2009 diff hist +19 Mouse modes
- 17:04, 4 June 2009 diff hist +102 N Three Button Motions Created page with '= Overview = This is a Config_mouse option that deserved a little explanation. Category:Mouse' current
- 17:03, 4 June 2009 diff hist +606 Config Mouse
- 12:49, 4 June 2009 diff hist +101 Label
- 12:48, 4 June 2009 diff hist +22 Pseudoatom
- 12:45, 4 June 2009 diff hist +28 Save sep current
- 18:59, 3 June 2009 diff hist +387 Pseudoatom
- 18:57, 3 June 2009 diff hist 0 File:Patom.png uploaded a new version of "File:Patom.png" current
- 18:56, 3 June 2009 diff hist +54 N File:Patom.png Showing how a pseudoatom can be used as a scene label.
- 18:47, 3 June 2009 diff hist +121 Seq view current
- 18:36, 3 June 2009 diff hist -15 Scene →EXAMPLES
- 16:14, 3 June 2009 diff hist +17 User:Inchoate
- 15:52, 3 June 2009 diff hist -12 Scene
- 15:50, 3 June 2009 diff hist +640 User:Inchoate
- 16:11, 27 May 2009 diff hist +197 m DrawBoundingBox just added another image w/padding.
- 16:09, 27 May 2009 diff hist +37 N File:Bb with padding.png Normal BB and BB with 10 Ang padding. current
- 22:22, 26 May 2009 diff hist +240 Load →User Comments/Examples
- 15:08, 26 May 2009 diff hist +105 User:Inchoate
- 15:01, 26 May 2009 diff hist +1,021 User:Inchoate
- 18:31, 22 May 2009 diff hist +136 Main Page
- 18:30, 22 May 2009 diff hist +137 N Category talk:ObjSel Scripts Created page with 'I chose to try the following format: * ScriptName :: Description. over * ScriptName — Description. Let's see what folks prefer.' current
- 18:29, 22 May 2009 diff hist -64 Category:ObjSel Scripts
- 18:27, 22 May 2009 diff hist +148 Category:ObjSel Scripts
- 18:26, 22 May 2009 diff hist +2,188 N ToGroup Created page with '= Overview = toGroup will convert a multistate object into a group of single-state objects. ''Be warned, by default it deletes your original object (since it's extracting a ...'
- 16:33, 21 May 2009 diff hist +17 Category:Dashes current
- 16:22, 21 May 2009 diff hist +306 N Category:Dashes Created page with 'Dashes are used to represent distances or otherwise ''connect'' two atoms. For example, if you want to show the distance between two atoms, you use the dist command and ...'
- 13:12, 20 May 2009 diff hist +54 Get
- 13:11, 20 May 2009 diff hist +144 Set
- 14:52, 12 May 2009 diff hist +104 Covers
- 14:50, 12 May 2009 diff hist -17 Main Page
- 14:50, 12 May 2009 diff hist +21 N File:Science090410.jpg Another Science cover current
- 11:47, 12 May 2009 diff hist +2,667 N Ramp New Created page with '= Overview = ramp_new creates a color ramp based on a map potential value or based on proximity to a molecular object. Color ramps are extremely powerful but complicated to ...'
- 11:42, 12 May 2009 diff hist +733 N Matrix Copy Created page with '= Overview = Matrix_copy copies a transformation matrix from one object to another. This command is often used after a protein structure alignment to bring other related obj...'
- 21:14, 11 May 2009 diff hist +97 Talk:Zero residues
- 10:23, 11 May 2009 diff hist +25 Specular
- 09:04, 11 May 2009 diff hist +6 Category:Script Library →Notes
- 09:03, 11 May 2009 diff hist +1 m Category:Script Library →Notes
- 09:03, 11 May 2009 diff hist +352 m Category:Script Library →Notes
- 00:42, 9 May 2009 diff hist +3,411 N Color h Created page with '= Overview = This script colors the selection passed in based on the hydrophobicity scale as defined by: ::Source: http://us.expasy.org/tools/pscale/Hphob.Eisenberg.html ::Amino ...'
- 23:29, 6 May 2009 diff hist +102 Set Dihedral
- 23:26, 6 May 2009 diff hist -4 Set Dihedral
- 23:25, 6 May 2009 diff hist -568 Kabsch →The Code
- 23:24, 6 May 2009 diff hist +29 N OptAlign Redirected page to Kabsch#The Code current
- 23:21, 6 May 2009 diff hist +36 APBS
- 23:20, 6 May 2009 diff hist +28 H Add
- 23:20, 6 May 2009 diff hist +28 Protein contact potential
- 23:19, 6 May 2009 diff hist +29 APBS
- 23:18, 6 May 2009 diff hist +74 N Category:Electrostatics Created page with 'Commands, settings, scripts and information about electrostatics in PyMOL.' current
- 23:17, 6 May 2009 diff hist +27 N Remove picked Redirected page to Remove Picked current
- 23:16, 6 May 2009 diff hist +23 N Ray trace mode Redirected page to Ray#Modes current
- 09:48, 5 May 2009 diff hist +134 Main Page
- 09:46, 5 May 2009 diff hist +82 Category:ObjSel Scripts
- 09:40, 5 May 2009 diff hist +6,198 N Findseq Created page with '= Overview & Motivation = Anyone ever give you a protein and then say, find the sequence "FLVEW"? Well, this script will find any string or regular expression in a given object ...'
- 21:23, 4 May 2009 diff hist +194 Hide
- 21:22, 4 May 2009 diff hist 0 N File:Show2.png current
- 21:22, 4 May 2009 diff hist +11 N File:Show1.png stuff shown current
- 16:47, 1 May 2009 diff hist 0 Get chains
- 16:47, 1 May 2009 diff hist +1 Get chains
- 16:47, 1 May 2009 diff hist +840 N Get chains Created page with '= Overview = This command will return a python list of chains for the given selection. Proteins structures often have more than one chain of residues present in a structure file...'
- 12:42, 1 May 2009 diff hist +1 Category:Script Library →Notes
- 12:41, 1 May 2009 diff hist +84 Category:Script Library →Notes
- 12:24, 1 May 2009 diff hist +80 Category:Script Library
- 10:50, 1 May 2009 diff hist -1,165 Talk:Cealign plugin Blanked the page
- 22:21, 30 April 2009 diff hist +40 Category:Script Library
- 10:25, 30 April 2009 diff hist +102 Category:Script Library
- 10:25, 30 April 2009 diff hist +76 Category talk:Script Library →Feedback on Changes: new section
- 10:24, 30 April 2009 diff hist -18 Main Page
- 10:18, 30 April 2009 diff hist +26 DrawBoundingBox
- 10:16, 30 April 2009 diff hist +3 Category:Script Library
- 10:13, 30 April 2009 diff hist +249 m Category:Script Library
- 09:45, 30 April 2009 diff hist +137 N Category:Uncategorized Scripts Created page with 'Please rely on this page as little as possible. If a suitable category for your script doesn't exist, that's great, just make a new one.' current
- 09:27, 30 April 2009 diff hist -82 Category talk:Script Library
- 09:27, 30 April 2009 diff hist -24 Category talk:Script Library
- 09:26, 30 April 2009 diff hist +338 Category talk:Script Library →Depositing Scripts: new section
- 09:26, 30 April 2009 diff hist -341 Category:Script Library
- 09:25, 30 April 2009 diff hist -84 Category:Script Library
- 09:05, 30 April 2009 diff hist 0 Category:Script Library
- 09:02, 30 April 2009 diff hist -12,600 MediaWiki:Common.css
- 09:00, 30 April 2009 diff hist +12,548 MediaWiki:Common.css
- 08:54, 30 April 2009 diff hist -179 Category:Script Library →Depositing Scripts
- 08:51, 30 April 2009 diff hist +26 m Center of mass
- 08:51, 30 April 2009 diff hist +26 Modevectors
- 08:51, 30 April 2009 diff hist +26 TransformSelectionByCameraView
- 08:51, 30 April 2009 diff hist +26 Ellipsoid current
- 08:51, 30 April 2009 diff hist +26 Bounding Box current
- 08:51, 30 April 2009 diff hist +26 Plane Wizard
- 08:50, 30 April 2009 diff hist +26 CGO Text
- 08:50, 30 April 2009 diff hist +26 Symmetry Axis current
- 08:50, 30 April 2009 diff hist +26 Perp maker
- 08:49, 30 April 2009 diff hist +1,392 N Category:Math Scripts Created page with '* Perp Maker -- Creates a perpendicular plane through the center of your protein with respect to the camera's current position. (If you translate the protein towards the cam...' current
- 08:49, 30 April 2009 diff hist -1,366 Category:Script Library →Math/Geometry/CGO
- 08:49, 30 April 2009 diff hist -1,225 Category:Script Library →Biochemical Scripts
- 08:48, 30 April 2009 diff hist +61 CreateAtom current
- 08:48, 30 April 2009 diff hist +33 Resicolor
- 08:48, 30 April 2009 diff hist +33 Pucker
- 08:48, 30 April 2009 diff hist +33 Show hydrophilic current
- 08:48, 30 April 2009 diff hist +33 Show charged current
- 08:48, 30 April 2009 diff hist +33 Show hydrophobics current
- 08:48, 30 April 2009 diff hist +33 Show aromatics current
- 08:47, 30 April 2009 diff hist +27 N Category:Biochemical Scripts Created page with 'Category:Script_Library' current
- 08:47, 30 April 2009 diff hist -471 Category:Script Library →Third Party
- 08:46, 30 April 2009 diff hist +32 Transform odb
- 08:46, 30 April 2009 diff hist +31 Wfmesh
- 08:46, 30 April 2009 diff hist +28 Nm Category:ThirdParty Scripts Created page with ' Category:Script_Library' current
- 08:46, 30 April 2009 diff hist +32 m Rasmolify current
- 08:46, 30 April 2009 diff hist +357 Category:Script Library
- 08:44, 30 April 2009 diff hist -1 DynoPlot
- 08:44, 30 April 2009 diff hist -1 CreateSecondaryStructure
- 08:44, 30 April 2009 diff hist +40 Nmr cnstr
- 08:43, 30 April 2009 diff hist +40 Motif current
- 08:43, 30 April 2009 diff hist +40 Translate And Measure current
- 08:43, 30 April 2009 diff hist +40 Measure Distance current
- 08:43, 30 April 2009 diff hist +40 Helicity check
- 08:43, 30 April 2009 diff hist +40 Iterate sses current
- 08:43, 30 April 2009 diff hist +40 WriteSS
- 08:42, 30 April 2009 diff hist +1,228 Category:Structural Biology Scripts
- 08:41, 30 April 2009 diff hist -1,174 Category:Script Library
- 08:40, 30 April 2009 diff hist +28 Read PDB-String current
- 08:39, 30 April 2009 diff hist +28 Pdbsurvey
- 08:39, 30 April 2009 diff hist +28 PythonTerminal
- 08:39, 30 April 2009 diff hist +28 Process All Files In Directory
- 08:39, 30 April 2009 diff hist +28 LoadDir
- 08:39, 30 April 2009 diff hist +28 FilterByMol
- 08:38, 30 April 2009 diff hist +762 N Category:System Scripts Created page with '* FilterByMol -- Filter a directory of files, and save their ligands to disk (by molecule). * LoadDir -- loads all the files of a type you specify from the path you speci...'
- 08:38, 30 April 2009 diff hist -623 Category:Script Library →System (OS/Filesystem/Web/etc)
- 08:36, 30 April 2009 diff hist +1,039 N Category:ObjSel Scripts Created page with '* ConnectedCloud -- Find connected clouds of objects in PyMOL * Zero_residues -- Renumber residues such that the first residue is 0. Useful for alignments. * [[List Sele...'
- 08:36, 30 April 2009 diff hist -1,012 Category:Script Library →Objects and Selections
- 08:35, 30 April 2009 diff hist +28 Split Movement
- 08:35, 30 April 2009 diff hist +28 Grepsel
- 08:35, 30 April 2009 diff hist +28 Get Coordinates II current
- 08:35, 30 April 2009 diff hist +28 Get Coordinates I
- 08:35, 30 April 2009 diff hist +28 Color Objects
- 08:35, 30 April 2009 diff hist +28 Selection Exists current
- 08:35, 30 April 2009 diff hist +28 m List Secondary Structures current
- 08:35, 30 April 2009 diff hist +28 List Colors current
- 08:34, 30 April 2009 diff hist +28 List Selection current
- 08:34, 30 April 2009 diff hist +28 Zero residues
- 08:34, 30 April 2009 diff hist +28 ConnectedCloud
- 08:34, 30 April 2009 diff hist +112 Category:Script Library →Objects and Selections
- 08:33, 30 April 2009 diff hist -841 Category:Script Library →User Interface
- 08:29, 30 April 2009 diff hist +2,400 N MediaWiki:Common.css Created page with '→CSS placed here will be applied to all skins: /*--------------------------------------------------| | dTree 2.05 | www.destroydrop.com/javascript/tree/ | |------------------...'
- 08:25, 30 April 2009 diff hist +24 Stereo ray
- 08:25, 30 April 2009 diff hist +24 Apropos
- 08:25, 30 April 2009 diff hist +24 Grepset
- 08:25, 30 April 2009 diff hist +24 Key Wait
- 08:25, 30 April 2009 diff hist +24 Mouse modes
- 08:24, 30 April 2009 diff hist +24 PowerMate Dial OS X
- 08:24, 30 April 2009 diff hist +24 ObjectByArrows current
- 08:24, 30 April 2009 diff hist -28 Category:Script Library →User Interface
- 08:22, 30 April 2009 diff hist +121 Category:Script Library
- 08:10, 30 April 2009 diff hist +41 ImmersiveViz
- 08:09, 30 April 2009 diff hist -4 ImmersiveViz
- 08:08, 30 April 2009 diff hist +854 N Category:UI Scripts Created page with '* ImmersiveViz -- A script used in conjunction with head tracking software to provide an immersive virtual experience. * ObjectByArrows -- Navigate between objects by usi...'
- 08:04, 30 April 2009 diff hist +25 Category:Script Library →User Interface
- 07:56, 30 April 2009 diff hist +29 Protect →Example
- 07:56, 30 April 2009 diff hist +43 Smooth
- 07:55, 30 April 2009 diff hist +924 N Smooth Created page with '= Overview = Smooth performs a window average of coordinate states. = Usage = <source lang="python"> smooth [ selection [, passes [, window [, first [, last [, ends]]]]]] ...'
- 07:50, 30 April 2009 diff hist +695 Protect
- 19:55, 29 April 2009 diff hist -16 Category:Script Library
- 19:52, 29 April 2009 diff hist +869 Category:Script Library
- 19:19, 29 April 2009 diff hist +154 Grid mode
- 19:18, 29 April 2009 diff hist +65 Set Dihedral
- 19:16, 29 April 2009 diff hist 0 Cavity cull current
- 15:15, 28 April 2009 diff hist +367 Talk:Orthoscopic →Orthoscopic: new section
- 19:31, 27 April 2009 diff hist +13 Show
- 19:13, 27 April 2009 diff hist +22 Mouse Controls
- 19:10, 27 April 2009 diff hist +248 Group
- 19:02, 27 April 2009 diff hist +61 N Talk:Transparency Created page with 'This setting is very important, we need more details on this.' current
- 14:54, 27 April 2009 diff hist -1 Fragment
- 14:53, 27 April 2009 diff hist +73 Fragment
- 14:53, 27 April 2009 diff hist +133 Fragment
- 14:50, 27 April 2009 diff hist +30 N File:Fragment ex.png Example using fragment command current
- 13:59, 27 April 2009 diff hist +21 Sphere transparency current
- 13:59, 27 April 2009 diff hist +20 N Sphere solvent Created page with 'Category:Spheres' current
- 13:59, 27 April 2009 diff hist +21 Sphere quality
- 13:59, 27 April 2009 diff hist +20 N Sphere point size Created page with 'Category:Spheres' current
- 13:59, 27 April 2009 diff hist +20 N Sphere point max size Created page with 'Category:Spheres' current
- 13:59, 27 April 2009 diff hist +21 Sphere mode current
- 13:58, 27 April 2009 diff hist +21 Sphere color current
- 13:58, 27 April 2009 diff hist +21 Sphere scale
- 13:54, 27 April 2009 diff hist +22 CASTp
- 13:53, 27 April 2009 diff hist +66 N Talk:PyMOL mailing list Created page with 'This link is no longer valid. SF is "working on it" last I heard.'
- 13:46, 27 April 2009 diff hist +87 Cartoon ring transparency current
- 13:43, 27 April 2009 diff hist +30 Seq view
- 13:41, 27 April 2009 diff hist +23 Map Trim
- 13:39, 27 April 2009 diff hist +22 Seq view format current
- 13:39, 27 April 2009 diff hist +23 Full screen
- 13:38, 27 April 2009 diff hist +23 Sort
- 13:04, 27 April 2009 diff hist +30 ObjectByArrows
- 07:53, 27 April 2009 diff hist +29 Category:Labeling current
- 07:51, 27 April 2009 diff hist +255 N Category:Labeling Created page with 'This category contains all the pages regarding labels in PyMOL. You can use simple labels to label atoms, molecules or objects. You can also modify their color, size, and write...'
- 07:49, 27 April 2009 diff hist +44 Label position
- 07:48, 27 April 2009 diff hist +1 Ray Trace Fog
- 07:48, 27 April 2009 diff hist +22 Ray Trace Fog
- 07:47, 27 April 2009 diff hist +23 Ribbon Width current
- 07:46, 27 April 2009 diff hist -24 Ambient current
- 07:46, 27 April 2009 diff hist +22 Seq view fill char current
- 07:45, 27 April 2009 diff hist +23 Commands
- 07:44, 27 April 2009 diff hist -43 m Commands Reverted edits by Inchoate (Talk) to last version by Cank
- 07:43, 27 April 2009 diff hist -82 Commands
- 07:26, 27 April 2009 diff hist +37 Vdw current
- 16:44, 23 April 2009 diff hist +123 Talk:Main Page →Searching: new section
- 16:39, 23 April 2009 diff hist +162 Wizard
- 10:43, 23 April 2009 diff hist -141 Main Page
- 16:15, 21 April 2009 diff hist +256 Main Page
- 12:29, 21 April 2009 diff hist +214 Main Page
- 09:22, 21 April 2009 diff hist +22 Label
- 09:21, 21 April 2009 diff hist +81 Talk:Label
- 09:21, 21 April 2009 diff hist +615 Label →EXAMPLES
- 19:20, 17 April 2009 diff hist -72 Ray
- 19:19, 17 April 2009 diff hist 0 N File:Ray traced.png current
- 19:19, 17 April 2009 diff hist 0 N File:No ray trace.png current
- 19:04, 17 April 2009 diff hist +29 Examples of nucleic acid cartoons
- 18:30, 17 April 2009 diff hist +258 N Category:Seqeuence Viewer Created page with 'PyMOL has a sequence viewer. It has many settings. You can interact with it (select residues, ranges, etc). This page contains information relating to the sequence viewer. [[...' current
- 18:27, 17 April 2009 diff hist 0 Identify →NOTES
- 18:27, 17 April 2009 diff hist -2 Pair fit
- 18:26, 17 April 2009 diff hist +65 Pair fit
- 18:25, 17 April 2009 diff hist +33 Intra rms cur
- 18:25, 17 April 2009 diff hist +33 Intra rms
- 18:25, 17 April 2009 diff hist +31 Intra fit
- 18:24, 17 April 2009 diff hist +33 Intra fit
- 18:24, 17 April 2009 diff hist -2 Rms cur
- 18:24, 17 April 2009 diff hist +33 Rms cur
- 18:24, 17 April 2009 diff hist +94 Rms
- 18:23, 17 April 2009 diff hist +95 Fit
- 18:22, 17 April 2009 diff hist +136 Align
- 18:18, 17 April 2009 diff hist 0 N File:After alignment.png current
- 18:17, 17 April 2009 diff hist 0 N File:Before alignment.png current
- 18:12, 17 April 2009 diff hist +26 CBC →Overview
- 18:11, 17 April 2009 diff hist -1,549 As Redirected page to Show as current
- 17:38, 17 April 2009 diff hist +6 Set Colour Redirecting to Set Color
- 17:38, 17 April 2009 diff hist +10 Average b
- 17:37, 17 April 2009 diff hist +29 Average b
- 17:35, 17 April 2009 diff hist +93 Extend
- 17:34, 17 April 2009 diff hist +77 Ribbon color current
- 17:32, 17 April 2009 diff hist +21 Deprotect
- 17:31, 17 April 2009 diff hist +22 Selection Macros
- 17:31, 17 April 2009 diff hist +22 Seq view unaligned color current
- 17:31, 17 April 2009 diff hist +22 Seq view color current
- 17:30, 17 April 2009 diff hist +22 Seq view label color current
- 17:30, 17 April 2009 diff hist 0 Label color
- 17:30, 17 April 2009 diff hist +22 Label color
- 17:30, 17 April 2009 diff hist +21 Label outline color current
- 17:29, 17 April 2009 diff hist +22 Color Objects
- 17:29, 17 April 2009 diff hist +51 Set Color
- 17:29, 17 April 2009 diff hist +52 Bg Color
- 17:13, 17 April 2009 diff hist +1 Practical Pymol for Beginners
- 17:12, 17 April 2009 diff hist +1,586 Practical Pymol for Beginners →Saving work
- 17:03, 17 April 2009 diff hist +356 Practical Pymol for Beginners →Scripting
- 16:56, 17 April 2009 diff hist +2,194 Practical Pymol for Beginners →Scripting
- 16:43, 17 April 2009 diff hist +94 Practical Pymol for Beginners →What else can this thing do?
- 16:41, 17 April 2009 diff hist +140 Practical Pymol for Beginners →Getting started: explore a protein
- 16:40, 17 April 2009 diff hist +26 Practical Pymol for Beginners →Getting started: explore a protein
- 16:37, 17 April 2009 diff hist +20 Practical Pymol for Beginners →The PyMol Interface
- 16:36, 17 April 2009 diff hist +489 N Category:Specular Reflections New page: '''Specular reflection''' is the perfect, mirror-like reflection of light (or sometimes other kinds of wave) from a surface, in which light from a single incoming direction (a ray) is refl... current
- 16:33, 17 April 2009 diff hist +459 N Specular intensity New page: = Overview = This controls how PyMOL displays specular reflections in the GUI (unrendered). This is analogous to Spec_power for ray traced images. Values range form [0, 200+]. = Syn... current
- 16:30, 17 April 2009 diff hist +422 N Specular New page: = Overview = This controls whether or not specular reflections are shown unrendered, in the GUI. Turning this off only makes a slight improvement in speed. = Syntax = <source lang="pytho...
- 16:26, 17 April 2009 diff hist +14 Spec power current
- 16:26, 17 April 2009 diff hist +309 N Spec power New page: = Overview = This setting controls the power of specular reflections. = Syntax = <source> # set the power set spec_power, float # turn up the reflections set spec_power, 200 </source> =...
- 16:26, 17 April 2009 diff hist +711 N Spec direct power New page: = Overview = This controls the direct specular power. Essentially, this is how strongly surfaces that are perpendicular to the ray drawn from the camera are rendered. The features seems ... current
- 16:25, 17 April 2009 diff hist +34 Spec reflect
- 16:23, 17 April 2009 diff hist 0 N File:Spec dir power.gif current
- 16:16, 17 April 2009 diff hist +566 Nm Spec direct New page: = Overview = This setting controls how PyMOL renders the direct specular reflection from a representation. This image shows an increasing Spec_direct setting from 0 to 1.0 [[Image:Sp... current
- 16:14, 17 April 2009 diff hist +22 N File:Spec direct.gif increasing spec_direct current
- 15:57, 17 April 2009 diff hist +511 N Solvent radius New page: = Overview = This defines the solvent radius. Changing the solvent radius in PyMOL affects how PyMOL interprets surfaces, [[Displaying_Biochemical_Properties#Surface-R... current
- 14:54, 17 April 2009 diff hist -18 Main Page
- 14:47, 17 April 2009 diff hist +866 N Opaque background New page: = Overview = This setting controls how PyMOL renders the background. If this opaque setting is '''on''' then the background is drawn as a solid color depending on your background color se... current
- 14:43, 17 April 2009 diff hist +24 N File:Sq2.png Surface_quality set to 2 current
- 14:41, 17 April 2009 diff hist +9 Surface quality
- 14:39, 17 April 2009 diff hist +355 N Ellipsoid color New page: = Overview = This setting controls the color of ellipsoids. = Syntax = <source lang="python"> # proper settings are colors set ellipsoid_color, color # for example set it to blue set ell... current
- 14:39, 17 April 2009 diff hist +1,185 N Surface quality New page: = Overview = This controls how well PyMOL draws surfaces. Lower values, like 0, are rough surface approximations. These low values are good for speed--especially for larger surfaces. Fo...
- 14:38, 17 April 2009 diff hist +591 N Ellipsoid quality New page: = Overview = This setting determines how much refinement PyMOL uses in rendering ellipsoids. Other representations have similar settings. The most often use...
- 14:37, 17 April 2009 diff hist +22 Color
- 14:31, 17 April 2009 diff hist +25 N File:Sq0.png Surface quality down to 0 current
- 14:31, 17 April 2009 diff hist +26 N File:Sqd.png surface_quality to default current
- 14:22, 17 April 2009 diff hist +361 N Ellipsoid scale New page: = Overview = This sets the relative scale of drawing Ellipsoids. Larger numbers make larger ellipsoids. = Syntax = <source lang="python"> # set to some real valued size set ellipsoid... current
- 14:21, 17 April 2009 diff hist +492 N Ellipsoid transparency New page: = Overview = This controls the level of Transparency with which PyMOL renders ellipsiods. Setting this to 0 means full opacity (no transparency); setting this to 1.0 means fully trans... current
- 12:09, 16 April 2009 diff hist +103 N Seq view alignment New page: = Overivew = = Syntax = <source lang="python"> </source> = See Also = Category:Seqeuence_Viewer current
- 12:09, 16 April 2009 diff hist +104 N Seq view discrete by state New page: = Overivew = = Syntax = <source lang="python"> </source> = See Also = Category:Seqeuence_Viewer current
- 12:09, 16 April 2009 diff hist +104 N Seq view unaligned mode New page: = Overivew = = Syntax = <source lang="python"> </source> = See Also = Category:Seqeuence_Viewer current
- 12:09, 16 April 2009 diff hist +276 N Seq view unaligned color New page: = Overivew = Sets the colors of unaligned residues in the sequence viewer. = Syntax = <source lang="python"> # set the color set seq_view_unaligned_color, color # for example set seq_vie...
- 12:06, 16 April 2009 diff hist +597 N Seq view label spacing New page: = Overivew = This controls how the sequence indices are shown in the sequence viewer. Setting this to 1 means every index will be shown, setting this to 5, means that every 5th residue in... current
- 12:05, 16 April 2009 diff hist +40 N File:Svl10.png Sequence_viewer label spacing set to 10. current
- 12:05, 16 April 2009 diff hist +38 N File:Svl5.png Sequence_viewer label spacing set to 5 current
- 12:00, 16 April 2009 diff hist +301 N Seq view fill char New page: = Overivew = This set the character used for filler. The default is '-'. = Syntax = <source lang="python"> # set the fill character to some character, c set seq_view_fill_char, c # for ...
- 11:57, 16 April 2009 diff hist +359 N Seq view color New page: = Overivew = This setting controls the color that the sequences in the sequence viewer are displayed. = Syntax = <source lang="python"> # set the color to 'color' # valid colors are any P...
- 11:52, 16 April 2009 diff hist +30 m Seq view overlay current
- 11:52, 16 April 2009 diff hist +23 Seq view location current
- 11:51, 16 April 2009 diff hist +31 Seq view label mode current
- 11:51, 16 April 2009 diff hist +31 Seq view label color
- 11:51, 16 April 2009 diff hist +31 Seq view format
- 09:35, 16 April 2009 diff hist +63 Ambient
- 09:33, 16 April 2009 diff hist +53 N File:AmbientScale.gif Animated gif showing increasing ambient from 0 to 1.0 current
- 09:25, 16 April 2009 diff hist +22 Internal gui width current
- 09:25, 16 April 2009 diff hist +22 Internal gui mode current
- 09:25, 16 April 2009 diff hist +22 Internal gui control size current
- 09:25, 16 April 2009 diff hist +22 Internal gui
- 09:25, 16 April 2009 diff hist +22 Internal feedback current
- 09:24, 16 April 2009 diff hist +22 Wrap output current
- 09:24, 16 April 2009 diff hist +22 Light9 Redirecting to Light current
- 09:24, 16 April 2009 diff hist +22 Light8 Redirecting to Light current
- 09:24, 16 April 2009 diff hist +22 Light7 Redirecting to Light current
- 09:24, 16 April 2009 diff hist +22 Light6 Redirecting to Light current
- 09:24, 16 April 2009 diff hist +22 Light5 Redirecting to Light current
- 09:24, 16 April 2009 diff hist +22 Light4 Redirecting to Light current
- 09:24, 16 April 2009 diff hist +22 Light3 Redirecting to Light current
- 09:24, 16 April 2009 diff hist +22 Light2 Redirecting to Light current
- 09:24, 16 April 2009 diff hist +22 Light current
- 09:22, 16 April 2009 diff hist +51 Light
- 09:22, 16 April 2009 diff hist +47 Light count
- 09:22, 16 April 2009 diff hist +19 N Light9 Redirecting to Light
- 09:22, 16 April 2009 diff hist +19 N Light8 Redirecting to Light
- 09:22, 16 April 2009 diff hist +19 N Light7 Redirecting to Light
- 09:21, 16 April 2009 diff hist +19 N Light6 Redirecting to Light
- 09:21, 16 April 2009 diff hist +19 N Light5 Redirecting to Light
- 09:21, 16 April 2009 diff hist +19 N Light4 Redirecting to Light
- 09:21, 16 April 2009 diff hist +19 N Light3 Redirecting to Light
- 09:21, 16 April 2009 diff hist +13 Light2 Redirecting to Light
- 09:19, 16 April 2009 diff hist +6 N Light2 New page: Lights
- 09:18, 16 April 2009 diff hist +1,600 N Light New page: = Overview = Lighting is important for high-quality shots. PyMOL supports of up to 10 virtual lights. You can turn the lights on/off and also position them where you want (behind the came...
- 09:16, 16 April 2009 diff hist +29 N File:Ll.gif Animated GIF of moving lights current
- 08:58, 16 April 2009 diff hist +18 N File:L2.png light moved a bit. current
- 08:57, 16 April 2009 diff hist +15 N File:L1.png normal lighting current
- 08:48, 16 April 2009 diff hist +283 N Wrap output New page: = Overview = This setting controls the width of the output in the GUI. = Syntax = <source lang="python"> # set it on or off set wrap_output, boolean # for example, turn on wrapping? set ...
- 08:45, 16 April 2009 diff hist +219 N Category:GUI New page: The internal GUI is the openGL-based user interface in PyMOL. You can modify how big it is, the size of hte controls, and even turn it on/off altogether. [[Image:Ig.png|thumb|200px|Snaps... current
- 08:44, 16 April 2009 diff hist +21 N File:Ig.png Interal gui snapshot. current
- 08:43, 16 April 2009 diff hist +18 Internal gui mode
- 08:43, 16 April 2009 diff hist +18 Internal feedback
- 08:42, 16 April 2009 diff hist +17 Internal gui width
- 08:42, 16 April 2009 diff hist +18 Internal gui control size
- 08:41, 16 April 2009 diff hist +606 N Internal gui New page: = Overview = The internal GUI is the openGL-based user interface (that is--not the TK-window). Here you can enable/disable proteins from view, color then, change their representation--a w...
- 08:41, 16 April 2009 diff hist 0 N File:Ig off.png current
- 08:40, 16 April 2009 diff hist +15 N File:Ig on.png Internal GUI on current
- 08:36, 16 April 2009 diff hist +474 N Internal gui mode New page: = Overview = This sets how PyMOL renders the internal GUI & controls. The default setting, 0. <gallery> Image:Ig_mode0.png|internal_gui_mode, set to 0 Image:Ig_mode1.png|internal_gui_mod...
- 08:35, 16 April 2009 diff hist 0 N File:Ig mode1.png current
- 08:35, 16 April 2009 diff hist 0 N File:Ig mode0.png current
- 08:32, 16 April 2009 diff hist +756 N Internal gui width New page: = Overview = This setting determines with width of the openGL-based internal GUI in pixels. If you have objects with very long names, this might come in handy so you can see more of the n...
- 08:30, 16 April 2009 diff hist +14 N File:Igwidth50.png IGW set to 50. current
- 08:30, 16 April 2009 diff hist +15 N File:Igwidth500.png IGW set to 500. current
- 08:29, 16 April 2009 diff hist +43 N File:Igwidth220.png internal_gui_width set to the default, 220. current
- 08:26, 16 April 2009 diff hist +500 N Internal gui control size New page: = Overview = This sets how large the internal gui controls are. An internal GUI control is the button you click on to enable/disable a protein, select colors, etc. <gallery> Image:Intera...
- 08:23, 16 April 2009 diff hist +34 N File:Igcs df30.png Interal gui control size set to 30 current
- 08:23, 16 April 2009 diff hist +30 N File:InteranlGuiControlSize Default.png InteranlGuiControlSize_Default current
- 08:20, 16 April 2009 diff hist +697 N Internal feedback New page: = Overview = The Internal_feedback is the openGL-based command line area. Setting this to 0 removes the area; setting it to 1 makes one line visible (so you can see what you're typing...
- 08:19, 16 April 2009 diff hist +26 N File:InternalFeedback10.png InternalFeedback set to 10 current
- 08:18, 16 April 2009 diff hist +26 N File:InternalFeedback1.png Internal feedback set to 1 current
- 21:33, 15 April 2009 diff hist +385 N Dash round ends New page: = Overview = This setting determines if PyMOL draws the ends of the gaps as flat or rounded. The default is set to 'off'. = Syntax = <source lang="python"> # set dash_round_ends to 'on' ... current
- 21:30, 15 April 2009 diff hist +51 Dash color current
- 21:29, 15 April 2009 diff hist 0 N File:DashColor64f.png current
- 21:28, 15 April 2009 diff hist 0 N File:DashColorMarine.png current
- 21:28, 15 April 2009 diff hist 0 N File:DashColorRed.png current
- 21:27, 15 April 2009 diff hist +593 N Dash color New page: = Overview = Sets the color of dashes. The default is a yellow. You can use any color PyMOL knows about. <gallery> Image:DashColorRed.png|Dash_color set to 'red' Image:DashColorMarine.p...
- 21:23, 15 April 2009 diff hist +429 N Dash gap New page: = Overview = Sets the distance (gap) between individual dashes. <gallery> Image:DashGap0.png|dash_gap set to 0. Image:DashGap3.png|dash_gap set to 3.0--very big gaps </gallery> = Syntax... current
- 21:23, 15 April 2009 diff hist +17 N File:DashGap3.png Dash gap set to 3 current
- 21:22, 15 April 2009 diff hist +32 N File:DashGap0.png Dash gap set to 0, makes a line. current
- 21:19, 15 April 2009 diff hist +468 N Dash length New page: = Overview = This setting controls the length of dashes (often seen when using distances). <gallery> Image:DL0_10.png|dash_length set to 0.10 Image:DL0_15.png|dash_length set to 0.15 Imag...
- 21:19, 15 April 2009 diff hist +22 N File:DL4.png dash_length set to 4.0 current
- 21:18, 15 April 2009 diff hist +23 N File:DL0 50.png dash_length set to 0.50 current
- 21:18, 15 April 2009 diff hist +23 N File:DL0 15.png dash_length set to 0.15 current
- 21:17, 15 April 2009 diff hist +23 N File:DL0 10.png Dash length set to 0.10 current
- 21:09, 15 April 2009 diff hist +21 Dash width
- 21:08, 15 April 2009 diff hist +360 N Dash width New page: = Overview = PyMOL has great control over its representation of dashes. You can use the default Dash_width, or <galler> Image:DashWidthEx.jpg|dash_width increasing from 1 to 9. = Syn...
- 21:06, 15 April 2009 diff hist +13 N File:DashWidthEx.jpg Dash width ex current
- 20:53, 15 April 2009 diff hist +40 Grid max current
- 20:53, 15 April 2009 diff hist +279 N Full screen New page: = Overview = This determines if PyMOL takes up the entire desktop screen or not. = Syntax = <source lang="python"> # make PyMOL run full screen set full_screen, on # go back to normal mo...
- 20:51, 15 April 2009 diff hist 0 Grid max
- 20:50, 15 April 2009 diff hist +372 N Grid max New page: = Overview = When Grid_Mode is turned on, Grid_Max determines the maximum number of slots that PyMOL will show. <gallery> Image:GrideMax0.png|Grid Max at the original value Image...
- 20:49, 15 April 2009 diff hist +19 N File:GridMax1.png Grid max, set to 7. current
- 20:48, 15 April 2009 diff hist 0 N File:GrideMax0.png current
- 17:24, 10 April 2009 diff hist +63 Talk:Modevectors current
- 17:05, 10 April 2009 diff hist +160 Main Page
- 11:14, 8 April 2009 diff hist +433 Isomesh →Examples
- 11:13, 8 April 2009 diff hist +40 N File:Isomesh ex1.png Example of trimmed isomesh; see example. current
- 22:52, 2 April 2009 diff hist +176 Talk:Linux Install
- 17:30, 2 April 2009 diff hist +323 Talk:Modevectors
- 13:06, 2 April 2009 diff hist +222 Main Page
- 13:04, 2 April 2009 diff hist -11 Modevectors
- 13:02, 2 April 2009 diff hist 0 File:Modevectors.png uploaded a new version of "Image:Modevectors.png": Updated version, shows the arrows better current
- 13:00, 2 April 2009 diff hist +701 m Modevectors →EXAMPLES
- 12:56, 2 April 2009 diff hist +34 N File:Modevectors.png Example of mode vectors in action.
- 12:45, 2 April 2009 diff hist +172 N Talk:Modevectors New page: This is cool. I've been wanting to do this for a while, but never got around to it. I added a photo generated from the defaults and an example script for the users. -- J
- 12:38, 2 April 2009 diff hist +8 Modevectors
- 17:42, 1 April 2009 diff hist -7 APBS