Difference between revisions of "Show bumps"

From PyMOLWiki
Jump to: navigation, search
(Related Settings)
 
Line 17: Line 17:
  
 
  show_bumps [ selection [, name ]]
 
  show_bumps [ selection [, name ]]
 +
 +
== Related Settings ==
 +
 +
* sculpt_vdw_vis_max (default: 0.3)
 +
* sculpt_vdw_vis_mid (default: 0.1)
 +
* sculpt_vdw_vis_min (default: -0.1)
  
 
[[Category:Script_Library]]
 
[[Category:Script_Library]]
 
[[Category:Pymol-script-repo]]
 
[[Category:Pymol-script-repo]]

Latest revision as of 03:21, 1 July 2012

Type Python Module
Download show_bumps.py
Author(s) Thomas Holder
License BSD-2-Clause
This code has been put under version control in the project Pymol-script-repo

The red discs in the image below show vdW overlaps or steric clashing. This script will create those bumps for your chosen molecule.

Sb.png

This is a script to visualize VDW clashes, just like the mutagenesis wizard does.

Posted on pymol-users mailing list.

Usage

show_bumps [ selection [, name ]]

Related Settings

  • sculpt_vdw_vis_max (default: 0.3)
  • sculpt_vdw_vis_mid (default: 0.1)
  • sculpt_vdw_vis_min (default: -0.1)