Difference between revisions of "Show bumps"
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|license = BSD-2-Clause | |license = BSD-2-Clause | ||
}} | }} | ||
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| + | The red discs in the image below show vdW overlaps or steric clashing. This script will create those bumps for your chosen molecule. | ||
| + | |||
| + | [[Image:sb.png|300px]] | ||
This is a script to visualize VDW clashes, just like the [[mutagenesis]] wizard does. | This is a script to visualize VDW clashes, just like the [[mutagenesis]] wizard does. | ||
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show_bumps [ selection [, name ]] | show_bumps [ selection [, name ]] | ||
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| + | == Related Settings == | ||
| + | |||
| + | * sculpt_vdw_vis_max (default: 0.3) | ||
| + | * sculpt_vdw_vis_mid (default: 0.1) | ||
| + | * sculpt_vdw_vis_min (default: -0.1) | ||
[[Category:Script_Library]] | [[Category:Script_Library]] | ||
[[Category:Pymol-script-repo]] | [[Category:Pymol-script-repo]] | ||
Latest revision as of 03:21, 1 July 2012
| Type | Python Module |
|---|---|
| Download | show_bumps.py |
| Author(s) | Thomas Holder |
| License | BSD-2-Clause |
| This code has been put under version control in the project Pymol-script-repo | |
The red discs in the image below show vdW overlaps or steric clashing. This script will create those bumps for your chosen molecule.
This is a script to visualize VDW clashes, just like the mutagenesis wizard does.
Posted on pymol-users mailing list.
Usage
show_bumps [ selection [, name ]]
Related Settings
- sculpt_vdw_vis_max (default: 0.3)
- sculpt_vdw_vis_mid (default: 0.1)
- sculpt_vdw_vis_min (default: -0.1)