Select sites
Revision as of 09:39, 14 July 2012 by Tlinnet (talk | contribs) (Created page with "{{Infobox script-repo |type = script |filename = select_sites.py |author = Thomas Holder |license = BSD-2-Clause }} select_sites make named sele...")
The printable version is no longer supported and may have rendering errors. Please update your browser bookmarks and please use the default browser print function instead.
| Type | Python Script |
|---|---|
| Download | select_sites.py |
| Author(s) | Thomas Holder |
| License | BSD-2-Clause |
| This code has been put under version control in the project Pymol-script-repo | |
select_sites make named selections from SITE records.
http://www.wwpdb.org/procedure.html#toc_10
For instance, trypsin (http://www.rcsb.org/pdb/files/1SGT.pdb?headerOnly=YES):
SITE 1 CAT 3 HIS A 57 ASP A 102 SER A 195 SITE 1 AC1 6 ASP A 165 ALA A 177A GLU A 180 GLU A 230 SITE 2 AC1 6 HOH A 259 HOH A 261
This requires that the authors actually perform the annotation.
Usage
import select_sites select_sites [ selection [, filename [, prefix [, nice [, quiet ]]]]]
nice = 0 or 1: make colored sticks representation for sites {default :1}