Difference between revisions of "SaveGroup"
(Created page with 'This script creates the command "saveGroup". saveGroup will save the specified group to disk as one file with all group objects in it, or as many files one pdb in each file.…')
Latest revision as of 08:57, 2 December 2010
This script creates the command "saveGroup". saveGroup will save the specified group to disk as one file with all group objects in it, or as many files one pdb in each file. To save to one file just call
to save to many files call
saveGroup groupName, oneFile=False
import pymol from pymol import cmd, stored def saveGroup(g, oneFile=None): """ Save all files inside group 'g' to either one file or a list of files PARAMS g name of the group to save oneFile if not specified or None, saves each protein in the group to its own file, if oneFile=True, then saves all the files in the group to just one file. RETURNS None """ oneFile = (oneFile!=None) if cmd.get_type(g) != "object:group": print "Error: please provide a group name to save." return stored.models = set() cmd.iterate(g, 'stored.models.add(model)') if oneFile: cmd.save( g + ".pdb", g) else: for x in stored.models: cmd.save( x + ".pdb", x) cmd.extend("saveGroup", saveGroup)