Difference between revisions of "Save"
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save file [,(selection) [,state [,format]] ] | save file [,(selection) [,state [,format]] ] | ||
</source> | </source> | ||
| + | |||
| + | === EXAMPLES === | ||
| + | <source lang="python"> | ||
| + | # save only the alpha carbons | ||
| + | save onlyCAs.pdb, n. CA | ||
| + | |||
| + | # save my MD trajectory file to disk | ||
| + | save myTraj.pdb, myMDTrajectory, state=0 | ||
| + | |||
| + | # save a PyMOL session | ||
| + | save thisSession.pse | ||
| + | </source> | ||
| + | |||
===PYMOL API=== | ===PYMOL API=== | ||
<source lang="python"> | <source lang="python"> | ||
Revision as of 11:00, 22 October 2009
DESCRIPTION
save writes selected atoms to a file.
- The file format is autodetected if the extension is ".pdb", ".pse", ".mol", ".mmod", or ".pkl".
- If the file extension ends in ".pse" (PyMOL Session), the complete PyMOL state is always saved to the file (the selection and state parameters are thus ignored).
- CLUSTALW formatted alignments can be written by PyMOL as well. Once you perform an alignment like the following,
align proteinA, proteinB, object=A_on_B
- the alignment can be written using:
save A_aligned_with_B.aln, A_on_B
USAGE
save file [,(selection) [,state [,format]] ]
EXAMPLES
# save only the alpha carbons
save onlyCAs.pdb, n. CA
# save my MD trajectory file to disk
save myTraj.pdb, myMDTrajectory, state=0
# save a PyMOL session
save thisSession.pse
PYMOL API
cmd.save(file, selection, state, format)
NOTES
- When saving a session file, then "state" has no effect.
- When state = 0, all states in the file are written. If you have more than one state, this produces a multi-state PDB file.
SEE ALSO
Load, Get Model