Difference between revisions of "Save"
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===DESCRIPTION=== | ===DESCRIPTION=== | ||
| − | '''save''' writes selected atoms to a file. | + | '''save''' writes selected atoms to a file. |
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| − | If | + | * The file format is autodetected if the extension is ".pdb", ".pse", ".mol", ".mmod", or ".pkl". |
| − | <source lang="python"> | + | * If the file extension ends in ".pse" (PyMOL Session), the complete PyMOL state is always saved to the file (the selection and state parameters are thus ignored). |
| + | * CLUSTALW formatted alignments can be written by PyMOL as well. Once you perform an alignment like the following, | ||
| + | ::<source lang="python"> | ||
align proteinA, proteinB, object=A_on_B | align proteinA, proteinB, object=A_on_B | ||
</source> | </source> | ||
| − | + | ::the alignment can be written using: | |
| − | <source lang="python"> | + | ::<source lang="python"> |
save A_aligned_with_B.aln, A_on_B | save A_aligned_with_B.aln, A_on_B | ||
</source> | </source> | ||
Revision as of 10:57, 22 October 2009
DESCRIPTION
save writes selected atoms to a file.
- The file format is autodetected if the extension is ".pdb", ".pse", ".mol", ".mmod", or ".pkl".
- If the file extension ends in ".pse" (PyMOL Session), the complete PyMOL state is always saved to the file (the selection and state parameters are thus ignored).
- CLUSTALW formatted alignments can be written by PyMOL as well. Once you perform an alignment like the following,
align proteinA, proteinB, object=A_on_B
- the alignment can be written using:
save A_aligned_with_B.aln, A_on_B
USAGE
save file [,(selection) [,state [,format]] ]
PYMOL API
cmd.save(file, selection, state, format)
NOTES
- When saving a session file, then "state" has no effect.
- When state = 0 (default), only the current state is written.
- When state = -1, then a multi-state output file is written (PDB only).
- In versions 1.XX, a multi-state output file is written when state = 0 (which is not default)
SEE ALSO
Load, Get Model