Difference between revisions of "Save"
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complete PyMOL state is always saved to the file (the selection and | complete PyMOL state is always saved to the file (the selection and | ||
state parameters are thus ignored). | state parameters are thus ignored). | ||
| − | + | ||
| + | If aligning two structures | ||
| + | <source lang="python"> | ||
| + | align proteinA, proteinB, object=A_on_B | ||
| + | </source> | ||
| + | a clustal formatted alignment file can be written | ||
| + | <source lang="python"> | ||
| + | save A_aligned_with_B.aln, A_on_B | ||
| + | </source> | ||
| + | |||
===USAGE=== | ===USAGE=== | ||
<source lang="python"> | <source lang="python"> | ||
Revision as of 09:25, 11 September 2009
DESCRIPTION
save writes selected atoms to a file. The file format is autodetected if the extesion is ".pdb", ".pse", ".mol", ".mmod", or ".pkl"
Note that if the file extension ends in ".pse" (PyMOL Session), the complete PyMOL state is always saved to the file (the selection and state parameters are thus ignored).
If aligning two structures
align proteinA, proteinB, object=A_on_B
a clustal formatted alignment file can be written
save A_aligned_with_B.aln, A_on_B
USAGE
save file [,(selection) [,state [,format]] ]
PYMOL API
cmd.save(file, selection, state, format)
NOTES
- When saving a session file, then "state" has no effect.
- When state = 0 (default), only the current state is written.
- When state = -1, then a multi-state output file is written (PDB only).
- In versions 1.XX, a multi-state output file is written when state = 0 (which is not default)
SEE ALSO
Load, Get Model