https://pymolwiki.org/index.php?title=Nuccyl&feed=atom&action=history
Nuccyl - Revision history
2024-03-28T20:44:06Z
Revision history for this page on the wiki
MediaWiki 1.35.7
https://pymolwiki.org/index.php?title=Nuccyl&diff=5397&oldid=prev
Inchoate at 19:15, 12 September 2008
2008-09-12T19:15:17Z
<p></p>
<table class="diff diff-contentalign-left diff-editfont-monospace" data-mw="interface">
<col class="diff-marker" />
<col class="diff-content" />
<col class="diff-marker" />
<col class="diff-content" />
<tr class="diff-title" lang="en">
<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td>
<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 19:15, 12 September 2008</td>
</tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l19" >Line 19:</td>
<td colspan="2" class="diff-lineno">Line 19:</td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[Category:PyMol_Integration|Nuccyl]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[Category:PyMol_Integration|Nuccyl]]</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[Category:Nucleic_Acids|Nuccyl]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[Category:Nucleic_Acids|Nuccyl]]</div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">[[Category:Biochemical_Properties]]</ins></div></td></tr>
</table>
Inchoate
https://pymolwiki.org/index.php?title=Nuccyl&diff=4335&oldid=prev
Inchoate at 22:40, 2 November 2007
2007-11-02T22:40:03Z
<p></p>
<table class="diff diff-contentalign-left diff-editfont-monospace" data-mw="interface">
<col class="diff-marker" />
<col class="diff-content" />
<col class="diff-marker" />
<col class="diff-content" />
<tr class="diff-title" lang="en">
<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td>
<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 22:40, 2 November 2007</td>
</tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l18" >Line 18:</td>
<td colspan="2" class="diff-lineno">Line 18:</td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[Category:PyMol_Integration|Nuccyl]]</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[Category:PyMol_Integration|Nuccyl]]</div></td></tr>
<tr><td colspan="2"> </td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">[[Category:Nucleic_Acids|Nuccyl]]</ins></div></td></tr>
</table>
Inchoate
https://pymolwiki.org/index.php?title=Nuccyl&diff=3061&oldid=prev
Gregori: Change of the nuccyl URL
2005-08-05T07:57:01Z
<p>Change of the nuccyl URL</p>
<table class="diff diff-contentalign-left diff-editfont-monospace" data-mw="interface">
<col class="diff-marker" />
<col class="diff-content" />
<col class="diff-marker" />
<col class="diff-content" />
<tr class="diff-title" lang="en">
<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td>
<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 07:57, 5 August 2005</td>
</tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l1" >Line 1:</td>
<td colspan="2" class="diff-lineno">Line 1:</td></tr>
<tr><td class='diff-marker'>−</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>See [http://www.<del class="diffchange diffchange-inline">mssm</del>.<del class="diffchange diffchange-inline">edu</del>/<del class="diffchange diffchange-inline">students</del>/<del class="diffchange diffchange-inline">jovinl02</del>/<del class="diffchange diffchange-inline">research</del>/nuccyl.html Nuccyl Home]</div></td><td class='diff-marker'>+</td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>See [http://www.<ins class="diffchange diffchange-inline">biosci</ins>.<ins class="diffchange diffchange-inline">ki.se</ins>/<ins class="diffchange diffchange-inline">groups</ins>/<ins class="diffchange diffchange-inline">ljo</ins>/<ins class="diffchange diffchange-inline">software</ins>/nuccyl.html Nuccyl Home]</div></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"></td></tr>
<tr><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==Overview==</div></td><td class='diff-marker'> </td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>==Overview==</div></td></tr>
</table>
Gregori
https://pymolwiki.org/index.php?title=Nuccyl&diff=1004&oldid=prev
Inchoate at 01:27, 7 May 2005
2005-05-07T01:27:14Z
<p></p>
<p><b>New page</b></p><div>See [http://www.mssm.edu/students/jovinl02/research/nuccyl.html Nuccyl Home]<br />
<br />
==Overview==<br />
'''nuccyl''' is a [http://www.perl.org/ Perl] program that allows [http://www.pymol.org/ PyMOL], a powerful open-source molecular modeling system, to display atomic models of nucleic acids in a highly simplified representation. By depicting the nucleic acid backbone as a cartoon and the bases of nucleotides as cylinders, similarly to the excellent programs [http://sgce.cbse.uab.edu/ribbons/ Ribbons] and [http://www-ibmc.u-strasbg.fr/upr9002/westhof/download.html Drawna], nuccyl and PyMOL allow to quickly grasp the overall folding of an RNA or DNA molecule<br />
<br />
[[Image:Phe_trna_small.jpg|thumb|Example Nuccyl Image]]<br />
[[Image:45s_rna_small.jpg|thumb|Example Nuccyl II]]<br />
[[Image:50s_small.jpg|thumb|Example Nuccyl III]]<br />
[[Image:P4p6_small.jpg|thumb|Example Nuccyl IV]]<br />
<br />
nuccyl produces base cylinder coordinates and command files to display them with PyMOL. The base pair analysis programs [http://beta-ndb.rutgers.edu/services/download/index.html#rnaview RNAView] and [http://rutchem.rutgers.edu/%7exiangjun/3DNA/ 3DNA] can also be optionally used to obtain starting input files for nuccyl.<br />
<br />
[http://beta-ndb.rutgers.edu/services/download/index.html#rnaview RNAView] can be downloaded and installed as [http://ndbserver.rutgers.edu/services/help/rnaview-readme.html described]; a [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=12824344&dopt=Abstract publication] describing the program is also available.<br />
Information and download links for [http://rutchem.rutgers.edu/%7exiangjun/3DNA/ 3DNA] may be found at the program's [http://rutchem.rutgers.edu/%7exiangjun/3DNA/ home page]; a [http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=12930962&dopt=Abstract paper] has also been published.<br />
<br />
----<br />
The four example images Copyright © 2000-2005 Luca Jovine. Do '''NOT''' reuse them without contacting him or reading his release license for the images!<br />
<br />
[[Category:PyMol_Integration|Nuccyl]]</div>
Inchoate