Difference between revisions of "Measure Distance"
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| (4 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
<source lang="python"> | <source lang="python"> | ||
| + | # This script writes the distance from | ||
| + | # atom mol1///25/ha to atom mol1///26/ha | ||
| + | # out to the file "dist.txt" | ||
| + | # Simply change your selections to see different distances. | ||
| + | |||
| + | # import PyMOL's command namespace | ||
from pymol import cmd | from pymol import cmd | ||
| + | |||
| + | # open dist.txt for writing | ||
f=open('dist.txt','w') | f=open('dist.txt','w') | ||
| + | |||
| + | # calculate the distance and store it in dst | ||
dst=cmd.distance('tmp','mol1///25/ha','mol1///26/ha') | dst=cmd.distance('tmp','mol1///25/ha','mol1///26/ha') | ||
| + | |||
| + | # write the formatted value of the distance (dst) | ||
| + | # to the output file | ||
f.write("%8.3f\n"%dst) | f.write("%8.3f\n"%dst) | ||
| + | |||
| + | # close the output file. | ||
f.close() | f.close() | ||
</source> | </source> | ||
| − | [[Category: | + | == See Also == |
| + | [[Distance]] | ||
| + | |||
| + | [[Category:Script_Library|Measure Distance]] | ||
| + | [[Category:Structural_Biology_Scripts]] | ||
Latest revision as of 08:43, 30 April 2009
# This script writes the distance from
# atom mol1///25/ha to atom mol1///26/ha
# out to the file "dist.txt"
# Simply change your selections to see different distances.
# import PyMOL's command namespace
from pymol import cmd
# open dist.txt for writing
f=open('dist.txt','w')
# calculate the distance and store it in dst
dst=cmd.distance('tmp','mol1///25/ha','mol1///26/ha')
# write the formatted value of the distance (dst)
# to the output file
f.write("%8.3f\n"%dst)
# close the output file.
f.close()