Main Page

From PyMOLWiki
Jump to: navigation, search
hosted by SBGridlogo2.jpg
Welcome to the PyMOL Wiki!
The community-run support site for the PyMOL molecular viewer.
To request a new account, email SBGrid at: accounts (@) sbgrid dot org
Quick Links
Tutorials Table of Contents Commands
Script Library Plugins FAQ
Gallery | Covers PyMOL Cheat Sheet (PDF) Getting Help
News & Updates
Official Release PyMOL v2.5 has been released on May 10, 2021.
Python 3 New Python 3 compatibility guide for scripts and plugins
POSF New PyMOL fellows announced for 2018-2019
Tutorial Plugins Tutorial updated for PyQt5
New Plugin PICv is a new plugin for clustering protein-protein interactions and visualization with available data from PDBe
Selection keywords New polymer.protein and polymer.nucleic selection keywords. Thanks everyone who participated in the poll!
Plugin Update MOLE 2.5 is an updated version of channel analysis software in PyMOL
New Script dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
Older News See Older News.
Did you know...

Multifilesave

The multifilesave command saves each object and/or state in a selection

to a separate file.

New in PyMOL 2.1

Usage

multifilesave filename [, selection [, state [, format ]]]

The filename argument must contain one or more placeholders:

{name}  : object name
{state} : state number
{title} : state title
{num}   : file number
{}      : object name (first) or state (second)

Arguments

  • filename = str: file path with placeholders
  • selection = str: atom selection {default: all}
  • state = int: object state (-1 for current, 0 for all states) {default: -1}
  • format = str: file format, e.g. pdb {default: guess from file extension}

Examples

multifilesave /tmp/{name}.pdb
multifilesave /tmp/{name}-{state}.cif, state=0
multifilesave /tmp/{}-{}.cif, state=0
multifilesave /tmp/{}-{title}.sdf, state=0

See Also

A Random PyMOL-generated Cover. See Covers.