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Annotate v

== Description ==

Author: Xin Yu

License: BSD, 2020

Version: 1.0

A simple-to-use script for annotation of VH or VL sequence of an antibody. It creates a Pymol object for each FR or CDR region. It utilizes the REST API interface of Abnum (http://www.bioinf.org.uk/abs/abnum/) from Dr Andrew Martin's group at UCL

Annotation Schemes

Currently supports Kabat, Chothia, Contact, IMGT1

1Definitions for Kabat, Chothia, Contact, and IIMGT are same as listed in the table (http://www.bioinf.org.uk/abs/info.html#kabatnum), except that for IMGT, H-CDR2 is defined as H51-H57 in this script, as opposed to of H51-H56 in the table. This slight revision generates result that matches that from IMGT website (http://www.imgt.org/)

Dependencies and Limitations

1. Import request module

2. Relies on internet connection to Abnum

3. Incomplete VH or VL sequence might not be annotated

How to use

1. Create a selection object for the V region, (such as VH ..→

A Random PyMOL-generated Cover. See Covers.