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Welcome to the PyMOL Wiki!
The community-run support site for the PyMOL molecular viewer.
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News & Updates
fetch_host setting
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Fetch_Host has been added to allow users to download PDBs from their PDB server (pdb, pdb euro, or pdb japan) of choice.
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Fetch
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Fetch has been updated to also load electron density maps.
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Schrodinger Buys PyMOL
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Schrodinger has purchased PyMOL. Development, support and open-source fun to continue! Read about the sale.
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User Movie
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One of our users has posted another interesting movie, images from which were created with PyMOL.
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New setting
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surface_cavity_mode to change how PyMOL displays cavities.
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Search fixed.
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Thanks to a eagle-eyed user, our search has been fixed. Please let us know if you have any search-related problems.
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New Command
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Cache—stores information on structures, so we don't have to recompute them.
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Warren
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News about Warren DeLano's passing may be read on Warren's memorial page.
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Setting
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Fetch_Path—Sets the default path for the fetch command.
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New Script
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SelInside—Creates a custom selection of all atoms spatially inside some user-defined box.
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New Script
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ContactsNCONT—The script selects residues and atoms from the list of the contacts found by NCONT from CCP4 Program Suite
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Fun
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PCR Rap video made with PyMOL (YouTube).
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PyMOLWiki
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Reformatted Main Page. Some delays might occur from resizing images, but that should go away once the images are cached.
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PyMOLWiki
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New — Search the PyMOLWiki via GoogleSearch
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PyMOL
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PyMOL is known to work under Mac OS X 10+ (Snow Leopard) using the new Fink and incentive builds. See Installing PyMOL under Fink.
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PyMOL
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PyMOL now has a Set command for basic settings, and a Set_bond command for bond-only settings.
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Did you know...
The DPL extension (version 2.3.0) produced a SQL statement which lead to a Database error.
The reason may be an internal error of DPL or an error which you made,
especially when using DPL options like titleregexp.
Query text is:
SELECT DISTINCT `pmw_page`.page_namespace AS page_namespace,`pmw_page`.page_title AS page_title,`pmw_page`.page_id AS page_id, `pmw_page`.page_title AS sortkey, `pmw_page`.page_counter AS page_counter FROM `pmw_page` INNER JOIN `pmw_categorylinks` AS cl0 ON `pmw_page`.page_id=cl0.cl_from AND (cl0.cl_to='Commands' OR cl0.cl_to='Plugins' OR cl0.cl_to='Script_Library' OR cl0.cl_to='Settings') WHERE 1=1 AND `pmw_page`.page_namespace IN (0) AND `pmw_page`.page_is_redirect=0 ORDER BY page_title ASC LIMIT 500 OFFSET 0
Error message is:
Unknown column 'pmw_page.page_counter' in 'field list' (localhost)
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A Random PyMOL-generated Cover. See Covers.
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