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Welcome to the PyMOL Wiki!
The community-run support site for the PyMOL molecular viewer.
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Gallery | Covers PyMOL Cheat Sheet (PDF) Getting Help
News & Updates
Official Release PyMOL v2.4 has been released on May 20, 2020.
Python 3 New Python 3 compatibility guide for scripts and plugins
Official Release PyMOL v2.3 has been released on February 11, 2019.
POSF New PyMOL fellows announced for 2018-2019
Tutorial Plugins Tutorial updated for PyQt5
New Plugin ProBiS H2O is a new plugin for identification of conserved waters in protein structures.
Selection keywords New polymer.protein and polymer.nucleic selection keywords. Thanks everyone who participated in the poll!
Plugin Update MOLE 2.5 is an updated version of channel analysis software in PyMOL
New Script dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
Older News See Older News.
Did you know...

Grepset

Type Python Script
Download grepset.py
Author(s) Ezequiel Panepucci
License BSD
This code has been put under version control in the project Pymol-script-repo

Included in psico
This command or function is available from psico, which is a PyMOL extension.

Module psico.helping

Use this little script to explore PyMOL's myriad settings.

Usefull for newbies and those with not so good memory skills...

To use:

  1. put the script in a file called grepset.py
  2. from within PyMOL execute run grepset.py. If you have the Pymol-script library configured, then import grepset
  3. try it out, see examples below.

Example 1: grepset light

cartoon_highlight_color        default
dot_lighting                   on
light                          [ -0.40000, -0.40000, -1.00000 ]
mesh_lighting                  off
two_sided_lighting             off
5 settings matched

Example 2: grepset trans

cartoon_transparency           0.00000
ray_transparency_contrast      1.00000
ray_transparency_shadows       1
ray_transparency_spec_cut      0.90000
ray_transparency_specular      0.40000
sphere_transparency           
..→
A Random PyMOL-generated Cover. See Covers.