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Revision as of 11:18, 11 February 2019 by Speleo3 (talk | contribs) (2.3)
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Welcome to the PyMOL Wiki!
The community-run support site for the PyMOL molecular viewer.
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Quick Links
Tutorials Table of Contents Commands
Script Library Plugins FAQ
Gallery | Covers PyMOL Cheat Sheet (PDF) Getting Help
News & Updates
Official Release PyMOL v2.3 has been released on February 11, 2019.
POSF New PyMOL fellows announced for 2018-2019
Tutorial Plugins Tutorial updated for PyQt5
New Plugin ProBiS H2O is a new plugin for identification of conserved waters in protein structures.
Selection keywords New polymer.protein and polymer.nucleic selection keywords. Thanks everyone who participated in the poll!
Plugin Update MOLE 2.5 is an updated version of channel analysis software in PyMOL
New Script dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
Older News See Older News.
Did you know...

Map Trim

Map Trim introduced in PyMol 0.99beta11, gives the user the ability to cut out a section of a map and read it back in as a completely new map. This was not previously possible prior to 0.99beta11. (Windows build at PyMol Beta or compile from source).

Usage

map_trim map-name, selection-name, buffer

Combined with the convenient new object-name wildcards (!!!), you could for example trim all your maps to 3 Angstroms around ligands with one commmand as follows

map_trim *, organic, 3

With map size now reduced, the map_double command can come in handy to increase mesh density on your figure.

map_double *
A Random PyMOL-generated Cover. See Covers.