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News & Updates Official Release PyMOL v1.8.4 has been released on October 4, 2016. New Script dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons New Plugin LiSiCA is a new plugin for 2D and 3D ligand based virtual screening using a fast maximum clique algorithm. Official Release PyMOL v1.8.0 has been released on Nov 18, 2015. PyMOL Open-Source Fellowship Schrödinger is now accepting applications for the PyMOL Open-Source Fellowship program! Details on http://pymol.org/fellowship Official Release PyMOL, AxPyMOL, and JyMOL v1.7.6 have all been released on May 4, 2015. New Plugin PyANM is a new plugin for easier Anisotropic Network Model (ANM) building and visualising in PyMOL. New Plugin Bondpack is a collection of PyMOL plugins for easy visualization of atomic bonds. New Plugin MOLE 2.0 is a new plugin for rapid analysis of biomacromolecular channels in PyMOL. 3D using Geforce PyMOL can now be visualized in 3D using Nvidia GeForce video cards (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards. Older News See Older News.

Did you know... B2transparency Type Python Module Download b2transparency.py Author(s) Thomas Holder License BSD-2-Clause This code has been put under version control in the project Pymol-script-repo b2transparency can set transparency settings like transparency or sphere_transparency for each atom scaled by b-factor (or any other numeric atomic property). Usage b2transparency [ selection [, setting [, minimum [, maximum [, var ]]]]] Example # some dummy molecule with increasing b-factor along the chain fab AAAAAAAAAAAAA alter all, b=resv b2transparency all as sticks show surface set surface_color, gray See Also spectrum

A Random PyMOL-generated Cover. See Covers.