News & Updates
New Script
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dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
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New Plugin
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LiSiCA is a new plugin for 2D and 3D ligand based virtual screening using a fast maximum clique algorithm.
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Official Release
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PyMOL v1.8.0 has been released on Nov 18, 2015.
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PyMOL Open-Source Fellowship
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Schrödinger is now accepting applications for the PyMOL Open-Source Fellowship program! Details on http://pymol.org/fellowship
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Official Release
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PyMOL, AxPyMOL, and JyMOL v1.7.6 have all been released on May 4, 2015.
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New Plugin
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PyANM is a new plugin for easier Anisotropic Network Model (ANM) building and visualising in PyMOL.
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New Plugin
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Bondpack is a collection of PyMOL plugins for easy visualization of atomic bonds.
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New Plugin
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MOLE 2.0 is a new plugin for rapid analysis of biomacromolecular channels in PyMOL.
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3D using Geforce
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PyMOL can now be visualized in 3D using Nvidia GeForce video cards (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards.
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Older News
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See Older News.
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Did you know...
Introduction
This script allows you to color two structures by Root Mean Square Deviation (RMSD).
The distances between aligned C-alpha atom pairs are stored as B-factors of these residues, which are colored by a color spectrum, with blue specifying the minimum pairwise RMSD and red indicating the maximum.
Unaligned residues are colored gray.
Usage
colorbyrmsd mobile, target [, doAlign [, doPretty [, guide [, method ]]]]
Arguments
- mobile = string: atom selection for mobile atoms
- target = string: atom selection for target atoms
- doAlign = 0 or 1: Superpose selections before calculating distances {default: 1}
- doPretty = 0 or 1: Show nice representation and colors {default: 1}
- guide = 0 or 1: Only use C-alpha atoms {default: 1}
- method = align or ..→
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A Random PyMOL-generated Cover. See Covers.
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