Main Page

From PyMOLWiki
Revision as of 14:45, 18 December 2017 by Speleo3 (talk | contribs) (poll protein/nucleic)
Jump to: navigation, search
hosted by SBGridlogo2.jpg
Welcome to the PyMOL Wiki!
The community-run support site for the PyMOL molecular viewer.
To request a new account, email SBGrid at: accounts (@) sbgrid dot org
Quick Links
Tutorials Table of Contents Commands
Script Library Plugins FAQ
Gallery | Covers PyMOL Cheat Sheet (PDF) Getting Help
News & Updates
Poll New protein/nucleic selection keywords for PyMOL - Tell us what you think!
Official Release PyMOL v2.0 has been released on September 20, 2017.
Plugin Update MOLE 2.5 is an updated version of channel analysis software in PyMOL
Official Release PyMOL v1.8.6 has been released on March 9, 2017.
Official Release PyMOL v1.8.4 has been released on October 4, 2016.
New Script dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
New Plugin LiSiCA is a new plugin for 2D and 3D ligand based virtual screening using a fast maximum clique algorithm.
Official Release PyMOL v1.8.0 has been released on Nov 18, 2015.
PyMOL Open-Source Fellowship Schrödinger is now accepting applications for the PyMOL Open-Source Fellowship program! Details on http://pymol.org/fellowship
Official Release PyMOL, AxPyMOL, and JyMOL v1.7.6 have all been released on May 4, 2015.
New Plugin PyANM is a new plugin for easier Anisotropic Network Model (ANM) building and visualising in PyMOL.
New Plugin Bondpack is a collection of PyMOL plugins for easy visualization of atomic bonds.
New Plugin MOLE 2.0 is a new plugin for rapid analysis of biomacromolecular channels in PyMOL.
3D using Geforce PyMOL can now be visualized in 3D using Nvidia GeForce video cards (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards.
Older News See Older News.
Did you know...

Chem comp cartn use

The chem_comp_cartn_use setting selects with coordinate columns to load from an mmCIF chemical component file.

New in PyMOL 2.1 and Open-Source revision 4184

Value Column Labels
0 Use first available (default)
1 _chem_comp_atom.pdbx_model_Cartn_{x,y,z}_ideal
2 _chem_comp_atom.model_Cartn_{x,y,z}
4 _chem_comp_atom.{x,y,z}

Example

set chem_comp_cartn_use, 1
load http://files.rcsb.org/ligands/download/HEM.cif, hem_ideal

set chem_comp_cartn_use, 2
load http://files.rcsb.org/ligands/download/HEM.cif, hem_model

align hem_ideal, hem_model

See Also

A Random PyMOL-generated Cover. See Covers.