Difference between revisions of "Main Page"

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| [https://pymol.org PyMOL v2.4 has been released] on May 20, 2020.
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Revision as of 12:11, 10 May 2021

hosted by SBGridlogo2.jpg
Welcome to the PyMOL Wiki!
The community-run support site for the PyMOL molecular viewer.
To request a new account, email SBGrid at: accounts (@) sbgrid dot org
Quick Links
Tutorials Table of Contents Commands
Script Library Plugins FAQ
Gallery | Covers PyMOL Cheat Sheet (PDF) Getting Help
News & Updates
Official Release PyMOL v2.5 has been released on May 10, 2021.
Python 3 New Python 3 compatibility guide for scripts and plugins
POSF New PyMOL fellows announced for 2018-2019
Tutorial Plugins Tutorial updated for PyQt5
New Plugin PICv is a new plugin for clustering protein-protein interactions and visualization with available data from PDBe
Selection keywords New polymer.protein and polymer.nucleic selection keywords. Thanks everyone who participated in the poll!
Plugin Update MOLE 2.5 is an updated version of channel analysis software in PyMOL
New Script dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
Older News See Older News.
Did you know...

ListSelection2

Type Python Script
Download figshare
Author(s) Pietro Gatti-Lafranconi
License CC BY 4.0

Overview

Alternative script to List_Selection that will:

  • list multiple residues once
  • include water and hetatoms
  • account for different chains/objects
  • produce a screen/printed output


Usage

listselection selection, [output=N/S/P, [HOH=Y/N ]]

where:

  • selection can be any existing or newly-defined selection
  • output controls if the list is hidden (default), printed on screen (S) or saved in a file (P)
  • HOH (default Y) allows to exclude (N) water residues from the list


Examples

PyMOL>listselection 1efa, output=P
Residues in '1efa': 1043
Results saved in listselection_1efa.txt


<source lang="python"> PyMOL>listselection sele, output=S, HOH=N Residues in 'sele, without HOH': ..→

A Random PyMOL-generated Cover. See Covers.


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