Difference between revisions of "Main Page"

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! Official Release
 
! Official Release
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| [http://pymol.org PyMOL v1.8.4 has been released] on October 4, 2016.
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| [https://pymol.org PyMOL v2.5 has been released] on May 10, 2021.
 
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! New Script
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! Python 3
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| [[dssr_block]] is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
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| New [[2to3|Python 3 compatibility guide]] for scripts and plugins
 
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! New Plugin
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! POSF
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| [[Lisica|LiSiCA]] is a new plugin for 2D and 3D ligand based virtual screening using a fast maximum clique algorithm.
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| [https://pymol.org/fellowship New PyMOL fellows announced for 2018-2019]
 
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! Official Release
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! Tutorial
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| [http://pymol.org PyMOL v1.8.0 has been released] on Nov 18, 2015.
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| [[Plugins Tutorial]] updated for PyQt5
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! PyMOL Open-Source Fellowship
 
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| Schrödinger is now accepting applications for the PyMOL Open-Source Fellowship program! Details on http://pymol.org/fellowship
 
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! Official Release
 
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| [http://pymol.org PyMOL, AxPyMOL, and JyMOL v1.7.6 have all been released] on May 4, 2015.
 
 
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! New Plugin
 
! New Plugin
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| [[PyANM|PyANM]] is a new plugin for easier Anisotropic Network Model (ANM) building and visualising in PyMOL.
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| [[PICv|PICv]] is a new plugin for clustering protein-protein interactions and visualization with available data from PDBe
 
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! New Plugin
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! Selection keywords
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| [[Bondpack]] is a collection of PyMOL plugins for easy visualization of atomic bonds.
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| New [[Selection Algebra|polymer.protein and polymer.nucleic]] selection keywords. Thanks everyone who participated in the [https://goo.gl/forms/r0Ck03VTytZQxN4A2 poll]!
 
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! New Plugin
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! Plugin Update
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| [[MOLE 2.0: advanced approach for analysis of biomacromolecular channels|MOLE 2.0]] is a new plugin for rapid analysis of biomacromolecular channels in PyMOL.
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| [[MOLE 2.0: advanced approach for analysis of biomacromolecular channels|MOLE 2.5]] is an updated version of channel analysis software in PyMOL
 
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! 3D using Geforce
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! New Script
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| PyMOL can now be [http://forums.geforce.com/default/topic/571604/3d-vision/3d-vision-working-with-qbs-in-opengl-software-using-geforce/2/ visualized in 3D using Nvidia GeForce video cards] (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards.
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| [[dssr_block]] is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
 
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! Older News
 
! Older News

Revision as of 12:11, 10 May 2021

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Welcome to the PyMOL Wiki!
The community-run support site for the PyMOL molecular viewer.
To request a new account, email SBGrid at: accounts (@) sbgrid dot org
Quick Links
Tutorials Table of Contents Commands
Script Library Plugins FAQ
Gallery | Covers PyMOL Cheat Sheet (PDF) Getting Help
News & Updates
Official Release PyMOL v2.5 has been released on May 10, 2021.
Python 3 New Python 3 compatibility guide for scripts and plugins
POSF New PyMOL fellows announced for 2018-2019
Tutorial Plugins Tutorial updated for PyQt5
New Plugin PICv is a new plugin for clustering protein-protein interactions and visualization with available data from PDBe
Selection keywords New polymer.protein and polymer.nucleic selection keywords. Thanks everyone who participated in the poll!
Plugin Update MOLE 2.5 is an updated version of channel analysis software in PyMOL
New Script dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
Older News See Older News.
Did you know...

Clip

clip alters the near and far clipping planes

USAGE

clip {near|far|move|slab|atoms}, distance [,selection [,state ]]

EXAMPLES

clip near, -5           # moves near plane away from you by 5 A
clip far, 10            # moves far plane towards you by 10 A
clip move, -5           # moves the slab away from you by 5 A
clip slab, 20           # sets slab thickness to 20 A
clip slab, 10, resi 11  # clip 10 A slab about residue 11
clip atoms, 5, pept     # clip atoms in "pept" with a 5 A buffer
                        # about their current camera positions

PYMOL API

cmd.clip( string mode, float distance, string selection = None)

SEE ALSO
A Random PyMOL-generated Cover. See Covers.


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