Difference between revisions of "Main Page"

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! Official Release
 
! Official Release
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| [https://pymol.org PyMOL v2.1 has been released] on March 13, 2018.
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| [https://pymol.org PyMOL v2.3 has been released] on February 11, 2019.
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! POSF
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| [https://pymol.org/fellowship New PyMOL fellows announced for 2018-2019]
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! Tutorial
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| [[Plugins Tutorial]] updated for PyQt5
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! New Plugin
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| [[ProBiS_H2O|ProBiS H2O]] is a new plugin for identification of conserved waters in protein structures.
 
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! Selection keywords
 
! Selection keywords
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! New Script
 
! New Script
 
| [[dssr_block]] is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
 
| [[dssr_block]] is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
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! New Plugin
 
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| [[Lisica|LiSiCA]] is a new plugin for 2D and 3D ligand based virtual screening using a fast maximum clique algorithm.
 
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! New Plugin
 
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| [[PyANM|PyANM]] is a new plugin for easier Anisotropic Network Model (ANM) building and visualising in PyMOL.
 
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! New Plugin
 
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| [[Bondpack]] is a collection of PyMOL plugins for easy visualization of atomic bonds.
 
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! New Plugin
 
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| [[MOLE 2.0: advanced approach for analysis of biomacromolecular channels|MOLE 2.0]] is a new plugin for rapid analysis of biomacromolecular channels in PyMOL.
 
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! 3D using Geforce
 
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| PyMOL can now be [http://forums.geforce.com/default/topic/571604/3d-vision/3d-vision-working-with-qbs-in-opengl-software-using-geforce/2/ visualized in 3D using Nvidia GeForce video cards] (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards.
 
 
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! Older News
 
! Older News

Revision as of 11:18, 11 February 2019

hosted by SBGridlogo2.jpg
Welcome to the PyMOL Wiki!
The community-run support site for the PyMOL molecular viewer.
To request a new account, email SBGrid at: accounts (@) sbgrid dot org
Quick Links
Tutorials Table of Contents Commands
Script Library Plugins FAQ
Gallery | Covers PyMOL Cheat Sheet (PDF) Getting Help
News & Updates
Official Release PyMOL v2.3 has been released on February 11, 2019.
POSF New PyMOL fellows announced for 2018-2019
Tutorial Plugins Tutorial updated for PyQt5
New Plugin ProBiS H2O is a new plugin for identification of conserved waters in protein structures.
Selection keywords New polymer.protein and polymer.nucleic selection keywords. Thanks everyone who participated in the poll!
Plugin Update MOLE 2.5 is an updated version of channel analysis software in PyMOL
New Script dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
Older News See Older News.
Did you know...

Split states

Split_States splits and orients multiple models and multimers from the biological unit file into a set of single-state molecular objects.

Syntax

split_states object [, first [, last [, prefix ]]]

This splits the object from first to last out to the array of objects prefixed by prefix. The prefix option is very handy if all your states--or a subset of the states--have the same name.

Using

To use split_states simply Load your molecule 

# example usage
load fileName.pdb1, name
split_states name
delete name

# split all the states to objects starting with conf
fetch 1nmr
split_states 1nmr, prefix=conf

Example

1VLS: A dimer. 

load 1vls.pdb1, 1vls
split_states 1vls
dele 1vls

<gallery> Image:1vls1.png|1VLS as a monomer. This is the state of 1VLS when I load the molecule (and select cartoon representation). Image:1vls1_dimer.png|1VLS as a dimer using the split_states command. ..→

A Random PyMOL-generated Cover. See Covers.


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