Revision as of 06:57, 27 November 2018

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News & Updates
POSF	New PyMOL fellows announced for 2018-2019
Tutorial	Plugins Tutorial updated for PyQt5
Official Release	PyMOL v2.2 has been released on July 24, 2018.
New Plugin	ProBiS H2O is a new plugin for identification of conserved waters in protein structures.
Selection keywords	New polymer.protein and polymer.nucleic selection keywords. Thanks everyone who participated in the poll!
Plugin Update	MOLE 2.5 is an updated version of channel analysis software in PyMOL
New Script	dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
Older News	See Older News.

Did you know...

Dump2CGO

= Overview =

Dumps a PyMOL object to a CGO object.

The Code

<source lang="python"> from pymol import cmd from pymol.cgo import *

def dump2surfaceCGO():

   CGOobj = []
   dumpedFile = open("dump.tmp").read()
   for block in dumpedFile.split('\n\n'):
       CGOobj.append(BEGIN)
       CGOobj.append(TRIANGLES)

       for line in block.split('\n'):
           if line == :
               continue

           vals = line.split()
           CGOobj.append(NORMAL)
           CGOobj.append(float(vals[3]))
           CGOobj.append(float(vals[4]))
           CGOobj.append(float(vals[5]))
           CGOobj.append(VERTEX)
           CGOobj.append(float(vals[0]))
           CGOobj.append(float(vals[1]))
           CGOobj.append(float(vals[2]))

       CGOobj.append(END)
   return CGOobj

def dump2meshCGO():

   CGOobj = []
   dumpedFile = open("dump.tmp").read()
   for block in dumpedFile.split('\n\n'):
       CGOobj.append(BEGIN)
       CGOobj.append(LINE_STRIP)

       for line in block.split('\n'):
           if  ..→

A Random PyMOL-generated Cover. See Covers.

@@ Line 29: / Line 29: @@
 |+ style="font-size: 1.4em; font-weight: bold; text-align:left; border-bottom: 2px solid #6678b1;" | News &amp; Updates
 |-
-! Official Release
+! POSF
-| [http://pymol.org PyMOL v1.8.4 has been released] on October 4, 2016.
+| [https://pymol.org/fellowship New PyMOL fellows announced for 2018-2019]
-|-
-! New Script
-| [[dssr_block]] is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
-|-
-! New Plugin
-| [[Lisica|LiSiCA]] is a new plugin for 2D and 3D ligand based virtual screening using a fast maximum clique algorithm.
-|-
-! Official Release
-| [http://pymol.org PyMOL v1.8.0 has been released] on Nov 18, 2015.
 |-
-! PyMOL Open-Source Fellowship
+! Tutorial
-| Schrödinger is now accepting applications for the PyMOL Open-Source Fellowship program! Details on http://pymol.org/fellowship
+| [[Plugins Tutorial]] updated for PyQt5
 |-
 ! Official Release
-| [http://pymol.org PyMOL, AxPyMOL, and JyMOL v1.7.6 have all been released] on May 4, 2015.
+| [https://pymol.org PyMOL v2.2 has been released] on July 24, 2018.
 |-
 ! New Plugin
-| [[PyANM|PyANM]] is a new plugin for easier Anisotropic Network Model (ANM) building and visualising in PyMOL.
+| [[ProBiS_H2O|ProBiS H2O]] is a new plugin for identification of conserved waters in protein structures.
 |-
-! New Plugin
+! Selection keywords
-| [[Bondpack]] is a collection of PyMOL plugins for easy visualization of atomic bonds.
+| New [[Selection Algebra|polymer.protein and polymer.nucleic]] selection keywords. Thanks everyone who participated in the [https://goo.gl/forms/r0Ck03VTytZQxN4A2 poll]!
 |-
-! New Plugin
+! Plugin Update
-| [[MOLE 2.0: advanced approach for analysis of biomacromolecular channels|MOLE 2.0]] is a new plugin for rapid analysis of biomacromolecular channels in PyMOL.
+| [[MOLE 2.0: advanced approach for analysis of biomacromolecular channels|MOLE 2.5]] is an updated version of channel analysis software in PyMOL
 |-
-! 3D using Geforce
+! New Script
-| PyMOL can now be [http://forums.geforce.com/default/topic/571604/3d-vision/3d-vision-working-with-qbs-in-opengl-software-using-geforce/2/ visualized in 3D using Nvidia GeForce video cards] (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards.
+| [[dssr_block]] is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
 |-
 ! Older News

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