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Official Release PyMOL v3.0 has been released on March 12, 2024.
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Did you know...

Gyration tensor

Type PyMOL Plugin
Download http://emptyewer.github.io/Gyration_tensor
Author(s) Venkatramanan Krishnamani
License -

Introduction

This program calculates and visualizes the gration tensors of a protein (based on geometry) for each chain in the PDB file.


How to get it

git clone https://github.com/emptyewer/Gyration_tensor.git

Required Dependencies on Linux and Mac OS X

sudo apt-get install python-tk python-numpy

Installing on Linux

  • Navigate to plugins > install
  • Locate the downloaded gyration_tensor.py file in the dialogbox and select 'OK'
  • Quit and Restart 'pymol'

Usage

  • Launch PyMOL
  • Navigate to Plugins > Contact Map Visualizer in PyMOL
  • When the first dialog box pops up, select PDB file and select 'OK'.
  • The plugin calculates and outputs the Magnitude and Direction of the tensors in the debug window and draws the ..→
A Random PyMOL-generated Cover. See Covers.