Difference between revisions of "Intra rms"
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Hongbo zhu (talk | contribs) (user comments had been removed for its irrelevance. They are copied to rms page given its importance and add a link to the page.) |
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| − | + | '''intra_rms''' calculates rms fit values for all states of an object over an atom selection relative to the indicated state. Coordinates are left unchanged. The rms values are returned as a python array. | |
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===PYMOL API=== | ===PYMOL API=== | ||
<source lang="python"> | <source lang="python"> | ||
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===PYTHON EXAMPLE=== | ===PYTHON EXAMPLE=== | ||
| − | + | <source lang="python"> | |
| − | + | from pymol import cmd | |
| − | + | rms = cmd.intra_rms("(name ca)",1) | |
| − | + | </source> | |
| + | ===USER COMMENTS=== | ||
| + | See [[Rms]] for selection caveats for this group of commands. | ||
===SEE ALSO=== | ===SEE ALSO=== | ||
| − | + | [[Fit]], [[Rms]], [[Rms_Cur]], [[Intra_Fit]], [[Intra_Rms_Cur]], [[Pair_Fit]] | |
| − | [[:Category: | + | [[Category:Commands|Intra Rms]] |
| + | [[Category:States|Intra Rms]] | ||
| + | [[Category:Structure_Alignment|Intra Rms]] | ||
Latest revision as of 05:52, 20 November 2013
intra_rms calculates rms fit values for all states of an object over an atom selection relative to the indicated state. Coordinates are left unchanged. The rms values are returned as a python array.
PYMOL API
cmd.intra_rms( string selection, int state)
PYTHON EXAMPLE
from pymol import cmd
rms = cmd.intra_rms("(name ca)",1)
USER COMMENTS
See Rms for selection caveats for this group of commands.