Difference between revisions of "Intra rms"

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(PYMOL API)
(user comments had been removed for its irrelevance. They are copied to rms page given its importance and add a link to the page.)
 
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===DESCRIPTION===
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'''intra_rms''' calculates rms fit values for all states of an object over an atom selection relative to the indicated state.  Coordinates are left unchanged.  The rms values are returned as a python array.
  "intra_rms" calculates rms fit values for all states of an object
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  over an atom selection relative to the indicated state.   
 
  Coordinates are left unchanged.  The rms values are returned
 
  as a python array.
 
 
 
===PYMOL API===
 
===PYMOL API===
 
<source lang="python">
 
<source lang="python">
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===PYTHON EXAMPLE===
 
===PYTHON EXAMPLE===
  from pymol import cmd
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<source lang="python">
  rms = cmd.intra_rms("(name ca)",1)
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from pymol import cmd
 
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rms = cmd.intra_rms("(name ca)",1)
===USER EXAMPLES/COMMENTS===
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</source>
  
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===USER COMMENTS===
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See [[Rms]] for selection caveats for this group of commands.
  
 
===SEE ALSO===
 
===SEE ALSO===
  fit, rms, rms_cur, intra_fit, intra_rms_cur, pair_fit
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[[Fit]], [[Rms]], [[Rms_Cur]], [[Intra_Fit]], [[Intra_Rms_Cur]], [[Pair_Fit]]
  
[[:Category:Commands|intra_rms]]</source>
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[[Category:Commands|Intra Rms]]
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[[Category:States|Intra Rms]]
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[[Category:Structure_Alignment|Intra Rms]]

Latest revision as of 04:52, 20 November 2013

intra_rms calculates rms fit values for all states of an object over an atom selection relative to the indicated state. Coordinates are left unchanged. The rms values are returned as a python array.

PYMOL API

cmd.intra_rms( string selection, int state)

PYTHON EXAMPLE

from pymol import cmd
rms = cmd.intra_rms("(name ca)",1)

USER COMMENTS

See Rms for selection caveats for this group of commands.

SEE ALSO

Fit, Rms, Rms_Cur, Intra_Fit, Intra_Rms_Cur, Pair_Fit