Difference between revisions of "Pymol-script-repo"

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== Introduction ==
 
== Introduction ==
 
In November 2011, a group of PyMOL users initiated together with Jason Vertrees, a project to let PyMOL scripts be
 
In November 2011, a group of PyMOL users initiated together with Jason Vertrees, a project to let PyMOL scripts be
−
under version control system (VCS) called Git. We hope that script authors and PyMOL users would be interested in this option.
+
under version control system (VCS) called Git.  
 +
 
 +
We hope that script authors and PyMOL users would be interested in this option.
  
 
== Benefits ==
 
== Benefits ==
Line 8: Line 10:
 
# The possibility to let script authors push changes to their script out to PyMOL users.
 
# The possibility to let script authors push changes to their script out to PyMOL users.
 
# Easier requiring assistance from the PyMOL [http://sourceforge.net/mail/?group_id=4546 mailing list].
 
# Easier requiring assistance from the PyMOL [http://sourceforge.net/mail/?group_id=4546 mailing list].
−
# Script will be tested for malicious code before added to the official repository.
 
  
 
== Official repository ==
 
== Official repository ==
−
The official repository is located at:
+
The repository is located at:
−
https://github.com/Pymol-Scripts/Pymol-script-repo
+
: https://github.com/Pymol-Scripts/Pymol-script-repo
 +
 
 +
== Naming convention ==
 +
We recommend that the name for script filename and pagename at the PyMOLWiki are the same.
 +
All letters should also be lower case.
 +
 
 +
Example: '''colorbydisplacement'''
  
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And the Git Read-Only access is:
+
{| class="wikitable"
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git://github.com/Pymol-Scripts/Pymol-script-repo.git
+
| For a description of use
 +
| http://pymolwiki.org/index.php/colorbydisplacement
 +
|-
 +
| For a color coded view
 +
| https://github.com/Pymol-Scripts/Pymol-script-repo/blob/master/colorbydisplacement.py
 +
|-
 +
| Raw download
 +
| https://raw.github.com/Pymol-Scripts/Pymol-script-repo/master/colorbydisplacement.py
 +
|-
 +
| In the users local script library
 +
| /home/tlinnet/Software/pymol/Pymol-script-repo/colorbydisplacement.py
 +
|-
 +
| To import in PyMOL
 +
| <code>import colorbydisplacement</code>
 +
|-
 +
| To print the available functions in PyMOL
 +
| <code>help(colorbydisplacement)</code>
 +
|}
  
−
== Same namespace ==
+
== Read more here ==
−
As a part of this project, we recommend that the name for script filename and pagename at the PyMOL wiki are the same.
 
−
All letters should also be small for both. This will let be possible to do, (Example: colorbydisplacement)
 
  
−
For a description of use
+
* [[git install|Git install instructions]]
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http://www.pymolwiki.org/index.php/colorbydisplacement
+
* [[git authors|Information how to contribute scripts to the repository]].
−
For a color coded view
+
* [[git script guidelines|Guidelines how to make a good PyMOL wiki script page]]
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https://github.com/Pymol-Scripts/Pymol-script-repo/blob/master/colorbydisplacement.py.py
+
* [[git admin|Information how Repository admins handle the contributions]]
−
For the raw code
 
−
https://raw.github.com/Pymol-Scripts/Pymol-script-repo/master/colorbydisplacement.py
 
−
In the users local script librarr
 
−
/home/tlinnet/Software/pymol/Pymol-script-repo/colorbydisplacement.py
 
−
To import in PyMOL
 
−
import colorbydisplacement
 

Revision as of 07:20, 13 January 2012

Introduction

In November 2011, a group of PyMOL users initiated together with Jason Vertrees, a project to let PyMOL scripts be under version control system (VCS) called Git.

We hope that script authors and PyMOL users would be interested in this option.

Benefits

The benefits from this project, is

  1. A convenient way, to let PyMOL users download all scripts at the PyMOL wiki, with a minimum of effort.
  2. The possibility to let script authors push changes to their script out to PyMOL users.
  3. Easier requiring assistance from the PyMOL mailing list.

Official repository

The repository is located at:

https://github.com/Pymol-Scripts/Pymol-script-repo

Naming convention

We recommend that the name for script filename and pagename at the PyMOLWiki are the same. All letters should also be lower case.

Example: colorbydisplacement

For a description of use http://pymolwiki.org/index.php/colorbydisplacement
For a color coded view https://github.com/Pymol-Scripts/Pymol-script-repo/blob/master/colorbydisplacement.py
Raw download https://raw.github.com/Pymol-Scripts/Pymol-script-repo/master/colorbydisplacement.py
In the users local script library /home/tlinnet/Software/pymol/Pymol-script-repo/colorbydisplacement.py
To import in PyMOL import colorbydisplacement
To print the available functions in PyMOL help(colorbydisplacement)

Read more here

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