Difference between revisions of "Git install scripts"

From PyMOLWiki
Jump to: navigation, search
Line 1: Line 1:
= The Manual and easiest way  =
+
= Manual download of scripts =
 
If you don't have the option or want't to install git on your system, then go to
 
If you don't have the option or want't to install git on your system, then go to
 
  https://github.com/Pymol-Scripts/Pymol-script-repo
 
  https://github.com/Pymol-Scripts/Pymol-script-repo
Line 8: Line 8:
  
 
Now go to
 
Now go to
 
+
= Git install instructions =
= The Git way - For windows users =
+
== For windows users ==
 
# Install [http://code.google.com/p/msysgit/downloads/list?can=3&q=official+Git Git for Windows].
 
# Install [http://code.google.com/p/msysgit/downloads/list?can=3&q=official+Git Git for Windows].
 
Use following settings in options, [http://www.geekgumbo.com/2010/04/09/installing-git-on-windows/ (You can read more here)].
 
Use following settings in options, [http://www.geekgumbo.com/2010/04/09/installing-git-on-windows/ (You can read more here)].
Line 22: Line 22:
 
You now have all the scripts available in your directory.
 
You now have all the scripts available in your directory.
  
 +
== For Ubuntu/Mint users ==
 +
# Install git
 +
sudo apt-get install git
 +
# Navigate to desired folder:
 +
cd /home/YOURNAME/Software/pymol
 +
git clone git://github.com/Pymol-Scripts/Pymol-script-repo.git
 +
You now have all the scripts available in: /home/YOURNAME/Software/pymol/Pymol-script-repo
 +
 +
= Adding "Pymol-script-repo" to the PyMOL search path =
 
You now have to add the "Pymol-script-repo" directory to the PyMOL search path.
 
You now have to add the "Pymol-script-repo" directory to the PyMOL search path.
 +
== For windows users ==
 
# Open notepad
 
# Open notepad
 
# Write (Remember forward slashes)
 
# Write (Remember forward slashes)
Line 28: Line 38:
 
  sys.path.append('C:/Users/YOURNAME/Documents/Pymol-script-repo')
 
  sys.path.append('C:/Users/YOURNAME/Documents/Pymol-script-repo')
 
Save under: C:/Users/YOURNAME/pymolrc.pym (Set: "Save as type" to "All files")
 
Save under: C:/Users/YOURNAME/pymolrc.pym (Set: "Save as type" to "All files")
 
+
== For Ubuntu/Mint users ==
Now start PyMOL, and test in PyMOL.
 
print sys.path
 
import colorbydisplacement
 
help(colorbydisplacement)
 
 
 
== Get latest changes to scripts ==
 
If new scripts are available or changes have been made, then:
 
# Navigate to '''C:/Users/YOURNAME/Documents/Pymol-script-repo'''
 
# Right click in folder -> Select: Git Bash
 
# Write in terminal
 
git pull origin master
 
 
 
= The Git way - For Ubuntu/Mint users =
 
# Install git
 
sudo apt-get install git
 
# Navigate to desired folder: cd /home/YOURNAME/Software/pymol
 
git clone git://github.com/Pymol-Scripts/Pymol-script-repo.git
 
You now have all the scripts available in: /home/YOURNAME/Software/pymol/Pymol-script-repo
 
 
 
You now have to add the "Pymol-script-repo" directory to the PyMOL search path.
 
 
  gedit ~/.pymolrc
 
  gedit ~/.pymolrc
 
Write
 
Write
Line 55: Line 45:
 
Save and exit
 
Save and exit
  
 +
= Test the Scripts =
 
Now start PyMOL, and test in PyMOL.
 
Now start PyMOL, and test in PyMOL.
 
  print sys.path
 
  print sys.path
Line 60: Line 51:
 
  help(colorbydisplacement)
 
  help(colorbydisplacement)
  
== Get latest changes to scripts ==
+
= Get latest changes to scripts =
 
If new scripts are available or changes have been made, then:
 
If new scripts are available or changes have been made, then:
 +
== For windows users ==
 +
# Navigate to '''C:/Users/YOURNAME/Documents/Pymol-script-repo'''
 +
# Right click in folder -> Select: Git Bash
 +
# Write in terminal
 +
git pull origin master
 +
== For Ubuntu/Mint users ==
 
# Navigate to '''/home/YOURNAME/Software/pymol/Pymol-script-repo'''
 
# Navigate to '''/home/YOURNAME/Software/pymol/Pymol-script-repo'''
 
# Write in terminal.
 
# Write in terminal.

Revision as of 07:29, 1 December 2011

Manual download of scripts

If you don't have the option or want't to install git on your system, then go to

https://github.com/Pymol-Scripts/Pymol-script-repo

Click the "ZIP" button, near the top left corner. Now unpack the files to a directory. For example:

C:/Users/YOURNAME/Documents/Pymol-script-repo
/home/YOURNAME/Software/pymol

Now go to

Git install instructions

For windows users

  1. Install Git for Windows.

Use following settings in options, (You can read more here).

  • Windows Explorer Integration -> Context Menu Entries -> Gut Bash Here + Git GUI here
  • Run Git and included Unix tools from Windows Command prompts
  • Checkout Windows style, commit Unix-style endings
  1. Navigate to: C:/Users/YOURNAME/Documents (Note, always use forward slashes "/" for compatibility)
  2. Right click in folder -> Select: Git Gui -> Clone Existing Repository
  3. Source Location: git://github.com/Pymol-Scripts/Pymol-script-repo.git
  4. Target Directory: C:/Users/YOURNAME/Documents/Pymol-script-repo

You now have all the scripts available in your directory.

For Ubuntu/Mint users

  1. Install git
sudo apt-get install git
  1. Navigate to desired folder:
cd /home/YOURNAME/Software/pymol
git clone git://github.com/Pymol-Scripts/Pymol-script-repo.git

You now have all the scripts available in: /home/YOURNAME/Software/pymol/Pymol-script-repo

Adding "Pymol-script-repo" to the PyMOL search path

You now have to add the "Pymol-script-repo" directory to the PyMOL search path.

For windows users

  1. Open notepad
  2. Write (Remember forward slashes)
import sys
sys.path.append('C:/Users/YOURNAME/Documents/Pymol-script-repo')

Save under: C:/Users/YOURNAME/pymolrc.pym (Set: "Save as type" to "All files")

For Ubuntu/Mint users

gedit ~/.pymolrc

Write

import sys
sys.path.append('/home/YOURNAME/Software/pymol/Pymol-script-repo')

Save and exit

Test the Scripts

Now start PyMOL, and test in PyMOL.

print sys.path
import colorbydisplacement
help(colorbydisplacement)

Get latest changes to scripts

If new scripts are available or changes have been made, then:

For windows users

  1. Navigate to C:/Users/YOURNAME/Documents/Pymol-script-repo
  2. Right click in folder -> Select: Git Bash
  3. Write in terminal
git pull origin master

For Ubuntu/Mint users

  1. Navigate to /home/YOURNAME/Software/pymol/Pymol-script-repo
  2. Write in terminal.
git pull origin master

Do you want to contribute with a script?

Information how to contribute scripts to the repository. It's easy!
http://www.pymolwiki.org/index.php/git_authors