Get Model

From PyMOLWiki
Revision as of 02:27, 22 March 2019 by Speleo3 (talk | contribs) (py3)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to navigation Jump to search

get_model returns a model object.

PYMOL API

cmd.get_model(string "selection", integer "state" )

USAGE

cmd.get_model("chain A")

NOTES

It can be useful to loop through all the atoms of a selection (rather than using the iterate command)

atoms = cmd.get_model("chain A")
for at in atoms.atom:
    print("ATOM DEFINITION: "+at.chain+" "\
                             +at.resn+" "\
                             +str(at.resi)+" "\
                             +at.name+" "\
                             +str(at.index)+" "\
                             +"%.2f " % (at.b)\
                             +str(at.coord[0])+" "\
                             +str(at.coord[1])+" "\
                             +str(at.coord[2]))

SEE ALSO