Difference between revisions of "GetNamesInSel"
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(get_object_list) |
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| (One intermediate revision by one other user not shown) | |||
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<source lang="python"> | <source lang="python"> | ||
from pymol import cmd, stored | from pymol import cmd, stored | ||
| − | def getNamesInSel(sel, sorted= | + | def getNamesInSel(sel, sorted=0, reversed=0, quiet=1): |
""" | """ | ||
PARAMETERS | PARAMETERS | ||
| Line 21: | Line 21: | ||
""" | """ | ||
| − | + | rList = cmd.get_object_list('(' + sel + ')') | |
| − | |||
| − | |||
# if you want the list reversed or sorted, | # if you want the list reversed or sorted, | ||
# uncomment the following lines | # uncomment the following lines | ||
| − | if sorted: | + | if int(sorted): |
rList.sort() | rList.sort() | ||
| − | if reversed: | + | if int(reversed): |
rList.reverse() | rList.reverse() | ||
| + | |||
| + | if not int(quiet): | ||
| + | print ' getNamesInSel: ', rList | ||
return rList | return rList | ||
| Line 39: | Line 40: | ||
= See Also = | = See Also = | ||
* [[Get_Names]] | * [[Get_Names]] | ||
| + | * [[get_object_list]] | ||
[[Category:Script_Library]] | [[Category:Script_Library]] | ||
| + | [[Category:ObjSel_Scripts]] | ||
Latest revision as of 03:58, 31 August 2011
Overview
This script returns the list of object names that exist in any given selection. For example, if you have 100 objects loaded (viz. ligand poses from small molecule docking) and select all atoms w/in some cutoff, then you have a selection. What objects are actually in that selection? This script will tell you.
The Code
from pymol import cmd, stored
def getNamesInSel(sel, sorted=0, reversed=0, quiet=1):
"""
PARAMETERS
sel,
The selection, object or group to iterate over
sorted (boolean),
Should the list be sorted?
reversed (boolean)
Should the list be reversed before returned? (Combined
with the above, you can return a decreasing-sorted list
of names
RETURNS
list[] of strings, representing the object names desired.
"""
rList = cmd.get_object_list('(' + sel + ')')
# if you want the list reversed or sorted,
# uncomment the following lines
if int(sorted):
rList.sort()
if int(reversed):
rList.reverse()
if not int(quiet):
print ' getNamesInSel: ', rList
return rList
cmd.extend("getNamesInSel", getNamesInSel)