Difference between revisions of "Gallery"

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{| align="center"
 
{| align="center"
|+ style="width: 90%; font-size:190%; font-weight: bold; color:#038; text-align:center; padding: 5px; margin-bottom: 15px; colspan:4" | PyMOLWiki Gallery
+
|+ style="font-size:190%; font-weight: bold; color:#038; padding-bottom: 15px;" |PyMOLWiki Gallery
 
|- style="text-align:center; font-weight: bold; font-size:120%; color:#333;"
 
|- style="text-align:center; font-weight: bold; font-size:120%; color:#333;"
 
| Cool PyMOL-generated Images and their Scripts.<br/><br/>''[[Talk:Gallery#Adding|Add Your Own]]''
 
| Cool PyMOL-generated Images and their Scripts.<br/><br/>''[[Talk:Gallery#Adding|Add Your Own]]''
 +
|-
 
|}
 
|}
  
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*[[surface_color]]
 
*[[surface_color]]
 
*[[surface_type]]
 
*[[surface_type]]
 +
}}
 +
 +
{{GalleryImage
 +
|image=QuteMolLike.png|size=400px|title=Cool Perspective|description=QuteMol like image--modern ''feel'' to it.
 +
|cmdString=<source lang="python">
 +
load $TUT/1hpv.pdb
 +
set_color oxygen, [1.0,0.4,0.4]
 +
set_color nitrogen, [0.5,0.5,1.0]
 +
remove solvent
 +
as spheres
 +
util.cbaw
 +
bg white
 +
set light_count,10
 +
set spec_count,1
 +
set shininess, 10
 +
set specular, 0.25
 +
set ambient,0
 +
set direct,0
 +
set reflect,1.5
 +
set ray_shadow_decay_factor, 0.1
 +
set ray_shadow_deday_range, 2
 +
unset depth_cue
 +
# for added coolness
 +
# set field_of_view, 60
 +
ray
 +
</source>
 +
|seeAlso=
 +
*[[Load]]
 +
*[[Set_color]]
 +
*[[Remove]]
 +
*[[Solvent]]
 +
*[[As]]
 +
*[[Util]]
 +
*[[Util.cbaw]]
 +
*[[Bg]]
 +
*[[Light_Count]]
 +
*[[Spec_Count]]
 +
*[[Shininess]]
 +
*[[Specular]]
 +
*[[Ambient]]
 +
*[[Direct]]
 +
*[[Reflect]]
 +
*[[Ray_shadow_decay_factor]]
 +
*[[Ray_shadow_decay_range]]
 +
*[[Unset]]
 +
*[[depth_cue]]
 +
*[[Ray]]
 +
*[[Set]]
 +
*[[Property_Selectors |Short form Selectors]]
 
}}
 
}}

Revision as of 17:59, 18 June 2008

PyMOLWiki Gallery
Cool PyMOL-generated Images and their Scripts.

Add Your Own



Grid Mode What To Type
Gm2.png
Description
This image shows Grid Mode in action.


See Also
fetch 1cll 1sra 1ggz 5pnt 1rlw 1cdy;
set grid_mode



Cool Perspective What To Type
Fov60.png
Description
This image shows a perspective through Field_Of_View.


See Also
load prot.pdb;
zoom i. 46-49 and n. CA
set field_of_view, 60
ray



Representing a binding pocket What To Type
Pocket.png
Description
This image shows a nice way to show binding surfaces


See Also
load $TUT/1hpv.pdb, tmp
extract lig, organic
extract prot, polymer
delete tmp

set surface_carve_cutoff, 4.5
set surface_carve_selection, lig
set surface_carve_normal_cutoff, -0.1

show surface, prot within 8 of lig
set two_sided_lighting
set transparency, 0.5
show sticks, lig
orient lig

set surface_color, white
set surface_type, 2  # mesh
unset ray_shadows



Cool Perspective What To Type
QuteMolLike.png
Description
QuteMol like image--modern feel to it.


See Also
load $TUT/1hpv.pdb
set_color oxygen, [1.0,0.4,0.4]
set_color nitrogen, [0.5,0.5,1.0]
remove solvent
as spheres
util.cbaw
bg white
set light_count,10
set spec_count,1
set shininess, 10
set specular, 0.25
set ambient,0
set direct,0
set reflect,1.5
set ray_shadow_decay_factor, 0.1
set ray_shadow_deday_range, 2
unset depth_cue
# for added coolness
# set field_of_view, 60
ray