Difference between revisions of "GROMACS Plugin"
(Created page with "A new plugin that connects GROMACS and PyMOL has been [http://pubs.acs.org/doi/abs/10.1021/ci400071x published]. Category:Plugins") |
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| − | + | {{Infobox script-repo | |
| + | |type = plugin | ||
| + | |download = https://github.com/tomaszmakarewicz/Dynamics/releases | ||
| + | |author = [http://www.biotech.ug.gda.pl/index_eng.php?mmenu=10121&katedra=5&zaklad=2 Laboratory of Biomolecular Systems Simulations] | ||
| + | |license = [https://www.gnu.org/licenses/gpl.html GPLv3] | ||
| + | }} | ||
| + | |||
| + | [https://github.com/tomaszmakarewicz/Dynamics Dynamics PyMOL Plugin] is plugin for PyMOL, which add molecular dynamics simulation feature. It is meant to be easy to use. The plugin uses GROMACS tools as a back-end. Project is developed as an open source and as such create full open source stack together with PyMOL and GROMACS. Because GROMACS can compile easily only on Unix like systems, the plugin also keep compatibility only with those. No Windows port is expected. | ||
| + | |||
| + | == Website == | ||
| + | |||
| + | https://github.com/tomaszmakarewicz/Dynamics | ||
| + | |||
| + | == Feauters == | ||
| + | |||
| + | [[File:Figure2a.png | 600px]] | ||
| + | |||
| + | == Installation == | ||
| + | |||
| + | === Ubuntu === | ||
| + | |||
| + | === Other GNU/Linux === | ||
| + | |||
| + | === Latest Snapshots === | ||
| + | |||
| + | == References == | ||
| + | |||
| + | [http://pubs.acs.org/doi/abs/10.1021/ci400071x Molecular Dynamics Simulation by GROMACS Using GUI Plugin for PyMOL Tomasz Makarewicz and Rajmund Kaźmierkiewicz Journal of Chemical Information and Modeling 2013 53 (5), 1229-1234] | ||
| + | |||
| + | == License == | ||
| + | |||
| + | This software (including its Debian packaging) is available to you under the terms of the GPL-3, see "/usr/share/common-licenses/GPL-3". Software is created and maintained by Laboratory of Biomolecular Systems Simulation at University of Gdansk.<br> | ||
| + | Contributors:<br> | ||
| + | - Tomasz Makarewicz (tomaszm [at] biotech [dot] ug [dot] edu [dot] pl) | ||
[[Category:Plugins]] | [[Category:Plugins]] | ||
Revision as of 08:06, 29 July 2013
| Type | PyMOL Plugin |
|---|---|
| Download | https://github.com/tomaszmakarewicz/Dynamics/releases |
| Author(s) | Laboratory of Biomolecular Systems Simulations |
| License | GPLv3 |
Dynamics PyMOL Plugin is plugin for PyMOL, which add molecular dynamics simulation feature. It is meant to be easy to use. The plugin uses GROMACS tools as a back-end. Project is developed as an open source and as such create full open source stack together with PyMOL and GROMACS. Because GROMACS can compile easily only on Unix like systems, the plugin also keep compatibility only with those. No Windows port is expected.
Website
https://github.com/tomaszmakarewicz/Dynamics
Feauters
Installation
Ubuntu
Other GNU/Linux
Latest Snapshots
References
License
This software (including its Debian packaging) is available to you under the terms of the GPL-3, see "/usr/share/common-licenses/GPL-3". Software is created and maintained by Laboratory of Biomolecular Systems Simulation at University of Gdansk.
Contributors:
- Tomasz Makarewicz (tomaszm [at] biotech [dot] ug [dot] edu [dot] pl)