Difference between revisions of "Format bonds"
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(Created page with "{{Infobox script-repo |type = Python Module |filename = format_bonds.py |author = Andreas Warnecke |license = BSD-2-Clause }} The script '''format_bon...") |
(created script page; linked in valence page) |
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* Remember to correctly configure plugin import (see: [[Git intro]]) | * Remember to correctly configure plugin import (see: [[Git intro]]) | ||
* '''format_bonds''' will introduce delocalized bonds by default or when ''bonds'' is larger than 2.<br> | * '''format_bonds''' will introduce delocalized bonds by default or when ''bonds'' is larger than 2.<br> | ||
| − | * Setting ''bonds=1'' will simply disable valence (globally) | + | * Setting ''bonds=1'' will simply disable valence display (globally!) |
* The ''selection'' argument is 'all' by default and can be used to restrict editing to selected residues.<br> | * The ''selection'' argument is 'all' by default and can be used to restrict editing to selected residues.<br> | ||
* Note that '''format_bonds''' will also format acidic residues, the C-terminus, arginine and nitro groups. | * Note that '''format_bonds''' will also format acidic residues, the C-terminus, arginine and nitro groups. | ||
| − | * Tip: press the TAB key after entering | + | * Tip: press the TAB key after entering format_bonds to get argument suggestions |
Latest revision as of 17:33, 9 June 2014
| Type | Python Module |
|---|---|
| Download | format_bonds.py |
| Author(s) | Andreas Warnecke |
| License | BSD-2-Clause |
| This code has been put under version control in the project Pymol-script-repo | |
The script format_bonds will automatically format bonds in amino acids.
Usage
format_bonds [ selection [, bonds ]]
Examples
format_bonds bonds=1
format_bonds bonds=2
format_bonds
import format_bonds
frag PHE
format_bonds
format_bonds bonds=2
Notes
- Remember to correctly configure plugin import (see: Git intro)
- format_bonds will introduce delocalized bonds by default or when bonds is larger than 2.
- Setting bonds=1 will simply disable valence display (globally!)
- The selection argument is 'all' by default and can be used to restrict editing to selected residues.
- Note that format_bonds will also format acidic residues, the C-terminus, arginine and nitro groups.
- Tip: press the TAB key after entering format_bonds to get argument suggestions