Difference between revisions of "Commands"

From PyMOLWiki
Jump to: navigation, search
Line 5: Line 5:
 
You can get a list of some common commands by typing "help commands" into the pymol command line. Typing this in to version 1.1r1 returns the following:
 
You can get a list of some common commands by typing "help commands" into the pymol command line. Typing this in to version 1.1r1 returns the following:
  
<code>
+
*INPUT/OUTPUT
    INPUT/OUTPUT load     save     delete   quit
+
**[[load]]
    VIEW         turn     move     clip     rock
+
**[[save]]
                  show     hide     enable   disable
+
**[[delete]]
                  reset     refresh   rebuild  
+
**[[quit]]
                  zoom     origin   orient  
+
 
                  view     get_view set_view
+
*VIEW
    MOVIES       mplay     mstop     mset     mdo
+
**[[turn]]
                  mpng     mmatrix   frame
+
**[[move]]
                  rewind   middle   ending
+
**[[clip]]
                  forward   backward
+
**[[rock]]
    IMAGING       png       mpng
+
**[[show]]
    RAY TRACING   ray      
+
**[[hide]]
    MAPS         isomesh   isodot
+
**[[enable]]
    DISPLAY       cls       viewport splash  
+
**[[disable]]
    SELECTIONS   select    mask 
+
**[[reset]]
    SETTINGS     set       button
+
**[[refresh]]
    ATOMS         alter     alter_state  
+
**[[rebuild]]
    EDITING       create   replace   remove   h_fill   remove_picked
+
**[[zoom]]
                  edit     bond     unbond   h_add   fuse      
+
**[[origin]]
                  undo     redo     protect   cycle_valence attach
+
**[[orient]]
    FITTING       fit       rms       rms_cur   pair_fit
+
**[[view]]
                  intra_fit intra_rms intra_rms_cur  
+
**[[get_view]]
    COLORS       color     set_color
+
**[[set_view]]
    HELP         help     commands
+
 
    DISTANCES     dist       
+
*MOVIES
    STEREO       stereo
+
**[[mplay]]
    SYMMETRY     symexp
+
**[[mstop]]
    SCRIPTS       @         run
+
**[[mset]]
    LANGUAGE     alias     extend
+
**[[mdo]]
</code>
+
**[[mpng]]
 +
**[[mmatrix]]
 +
**[[frame]]
 +
**[[rewind]]
 +
**[[middle]]
 +
**[[ending]]
 +
**[[forward]]
 +
**[[backward]]
 +
 
 +
*IMAGING
 +
**[[png]]
 +
**[[mpng]]
 +
 
 +
*RAY TRACING
 +
**[[ray]]
 +
 
 +
*MAPS
 +
**[[isomesh]]
 +
**[[isodot]]
 +
 
 +
*DISPLAY
 +
**[[cls]]
 +
**[[viewport]]
 +
**[[splash]]
 +
 
 +
*SELECTIONS
 +
**[[select]]
 +
**[[mask]]
 +
    
 +
*SETTINGS
 +
**[[set]]
 +
**[[button]]
 +
 
 +
*ATOMS
 +
**[[alter]]
 +
**[[alter_state]]
 +
 
 +
*EDITING
 +
**[[create]]
 +
**[[replace]]
 +
**[[remove]]
 +
**[[h_fill]]
 +
**[[remove_picked]]
 +
**[[edit]]
 +
**[[bond]]
 +
**[[unbond]]
 +
**[[h_add]]
 +
**[[fuse]]
 +
**[[undo]]
 +
**[[redo]]
 +
**[[protect]]
 +
**[[cycle_valence]]
 +
**[[attach]]
 +
 
 +
*FITTING
 +
**[[fit]]
 +
**[[rms]]
 +
**[[rms_cur]]
 +
**[[pair_fit]]
 +
**[[intra_fit]]
 +
**[[intra_rms]]
 +
**[[intra_rms_cur]]
 +
 
 +
*COLORS
 +
**[[color]]
 +
**[[set_color]]
 +
 
 +
*HELP
 +
**[[help]]
 +
**[[commands]]
 +
 
 +
*DISTANCES
 +
**[[dist]]      
 +
 
 +
*STEREO
 +
**[[stereo]]
 +
 
 +
*SYMMETRY
 +
**[[symexp]]
 +
 
 +
*SCRIPTS
 +
**[[@]]
 +
**[[run]]
 +
 
 +
*LANGUAGE
 +
**[[alias]]
 +
**[[extend]]
  
 
[[Category:Commands]]
 
[[Category:Commands]]

Revision as of 06:43, 27 April 2009

Commands are functions in pymol that are used for viewing, manipulating, and storing molecules.

The PyMOLWiki has a complete list of commands in PyMOL. Just check out the Commands' category page.

You can get a list of some common commands by typing "help commands" into the pymol command line. Typing this in to version 1.1r1 returns the following:

  • RAY TRACING